==14580== Memcheck, a memory error detector ==14580== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==14580== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==14580== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestConvergenceTester -malloc_debug -malloc_dump -memory_info ==14580== Parent PID: 14471 ==14580== ==14580== ==14580== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==14580== Open file descriptor 10: /dev/shm/open_mpi.0000 ==14580== at 0xCACC536: __open_nocancel (open64_nocancel.c:39) ==14580== by 0xCA50BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==14580== by 0x1133389E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14580== by 0x11333A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14580== by 0x11332C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14580== by 0x11332F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14580== by 0x11202159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14580== by 0xCE160E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE1B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE1C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE1318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE4D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xDE01446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14580== by 0xC5A02D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14580== by 0xC5A0327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14580== by 0x401A874: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14580== by 0x4014E81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14580== by 0x4017F4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14580== by 0x4017DE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14580== by 0x40184DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14580== by 0x40132D8: main (TestConvergenceTester.cpp:18) ==14580== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14580== Open file descriptor 9: ==14580== at 0xCADA96B: eventfd (syscall-template.S:120) ==14580== by 0x11393188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14580== by 0x11391395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14580== by 0x11391704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14580== by 0x113919F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14580== by 0x112F80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14580== by 0x112F81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14580== by 0x11202120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14580== by 0xCE160E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE1B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE1C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE1318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE4D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xDE01446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14580== by 0xC5A02D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14580== by 0xC5A0327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14580== by 0x401A874: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14580== by 0x4014E81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14580== by 0x4017F4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14580== by 0x4017DE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14580== by 0x40184DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14580== by 0x40132D8: main (TestConvergenceTester.cpp:18) ==14580== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14580== Open file descriptor 8: ==14580== at 0xCACB2BB: pipe2 (syscall-template.S:120) ==14580== by 0x11392F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14580== by 0x11395579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14580== by 0x11395774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14580== by 0x113918AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14580== by 0x112F80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14580== by 0x112F81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14580== by 0x11202120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14580== by 0xCE160E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE1B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE1C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE1318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE4D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xDE01446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14580== by 0xC5A02D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14580== by 0xC5A0327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14580== by 0x401A874: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14580== by 0x4014E81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14580== by 0x4017F4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14580== by 0x4017DE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14580== by 0x40184DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14580== by 0x40132D8: main (TestConvergenceTester.cpp:18) ==14580== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14580== Open file descriptor 7: ==14580== at 0xCACB2BB: pipe2 (syscall-template.S:120) ==14580== by 0x11392F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14580== by 0x11395579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14580== by 0x11395774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14580== by 0x113918AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14580== by 0x112F80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14580== by 0x112F81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14580== by 0x11202120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14580== by 0xCE160E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE1B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE1C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE1318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE4D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xDE01446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14580== by 0xC5A02D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14580== by 0xC5A0327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14580== by 0x401A874: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14580== by 0x4014E81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14580== by 0x4017F4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14580== by 0x4017DE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14580== by 0x40184DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14580== by 0x40132D8: main (TestConvergenceTester.cpp:18) ==14580== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14580== Open file descriptor 6: ==14580== at 0xCADB46B: epoll_create1 (syscall-template.S:120) ==14580== by 0x113956FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14580== by 0x113918AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14580== by 0x112F80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14580== by 0x112F81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14580== by 0x11202120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14580== by 0xCE160E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE1B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE1C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE1318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xCE4D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14580== by 0xDE01446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14580== by 0xC5A02D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14580== by 0xC5A0327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14580== by 0x401A874: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==14580== by 0x4014E81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14580== by 0x4017F4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14580== by 0x4017DE1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14580== by 0x40184DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14580== by 0x40132D8: main (TestConvergenceTester.cpp:18) ==14580== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14580== ==14580== HEAP SUMMARY: ==14580== in use at exit: 104,933 bytes in 641 blocks ==14580== total heap usage: 2,012,420 allocs, 2,011,779 frees, 620,155,185 bytes allocated ==14580== ==14580== LEAK SUMMARY: ==14580== definitely lost: 0 bytes in 0 blocks ==14580== indirectly lost: 0 bytes in 0 blocks ==14580== possibly lost: 0 bytes in 0 blocks ==14580== still reachable: 11,957 bytes in 44 blocks ==14580== suppressed: 92,976 bytes in 597 blocks ==14580== Reachable blocks (those to which a pointer was found) are not shown. ==14580== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==14580== ==14580== For lists of detected and suppressed errors, rerun with: -s ==14580== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 117 from 34)