==16198== Memcheck, a memory error detector
==16198== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==16198== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==16198== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestPeriodicNodeBasedCellPopulationParallelMethods -malloc_debug -malloc_dump -memory_info
==16198== Parent PID: 15478
==16198== 
==16198== 
==16198== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==16198== Open file descriptor 10: /dev/shm/open_mpi.0000
==16198==    at 0x1194C536: __open_nocancel (open64_nocancel.c:39)
==16198==    by 0x118D0BC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==16198==    by 0x1668689E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16198==    by 0x16686A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16198==    by 0x16685C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16198==    by 0x16685F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16198==    by 0x16555159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16198==    by 0x1219A0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x1219F49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x121A02C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x1219718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x121D1627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x12DF6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16198==    by 0xF1782D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16198==    by 0xF178327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16198==    by 0x4022144: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16198==    by 0x401C8E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16198==    by 0x401F36E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16198==    by 0x401F201: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16198==    by 0x401F8FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16198==    by 0x401AD38: main (TestPeriodicNodeBasedCellPopulationParallelMethods.cpp:18)
==16198== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16198== Open file descriptor 9:
==16198==    at 0x1195A96B: eventfd (syscall-template.S:120)
==16198==    by 0x166E8188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16198==    by 0x166E6395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16198==    by 0x166E6704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16198==    by 0x166E69F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16198==    by 0x1664B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16198==    by 0x1664B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16198==    by 0x16555120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16198==    by 0x1219A0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x1219F49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x121A02C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x1219718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x121D1627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x12DF6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16198==    by 0xF1782D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16198==    by 0xF178327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16198==    by 0x4022144: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16198==    by 0x401C8E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16198==    by 0x401F36E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16198==    by 0x401F201: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16198==    by 0x401F8FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16198==    by 0x401AD38: main (TestPeriodicNodeBasedCellPopulationParallelMethods.cpp:18)
==16198== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16198== Open file descriptor 8:
==16198==    at 0x1194B2BB: pipe2 (syscall-template.S:120)
==16198==    by 0x166E7F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16198==    by 0x166EA579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16198==    by 0x166EA774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16198==    by 0x166E68AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16198==    by 0x1664B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16198==    by 0x1664B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16198==    by 0x16555120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16198==    by 0x1219A0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x1219F49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x121A02C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x1219718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x121D1627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x12DF6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16198==    by 0xF1782D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16198==    by 0xF178327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16198==    by 0x4022144: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16198==    by 0x401C8E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16198==    by 0x401F36E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16198==    by 0x401F201: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16198==    by 0x401F8FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16198==    by 0x401AD38: main (TestPeriodicNodeBasedCellPopulationParallelMethods.cpp:18)
==16198== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16198== Open file descriptor 7:
==16198==    at 0x1194B2BB: pipe2 (syscall-template.S:120)
==16198==    by 0x166E7F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16198==    by 0x166EA579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16198==    by 0x166EA774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16198==    by 0x166E68AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16198==    by 0x1664B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16198==    by 0x1664B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16198==    by 0x16555120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16198==    by 0x1219A0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x1219F49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x121A02C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x1219718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x121D1627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x12DF6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16198==    by 0xF1782D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16198==    by 0xF178327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16198==    by 0x4022144: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16198==    by 0x401C8E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16198==    by 0x401F36E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16198==    by 0x401F201: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16198==    by 0x401F8FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16198==    by 0x401AD38: main (TestPeriodicNodeBasedCellPopulationParallelMethods.cpp:18)
==16198== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16198== Open file descriptor 4:
==16198==    at 0x1195B46B: epoll_create1 (syscall-template.S:120)
==16198==    by 0x166EA6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16198==    by 0x166E68AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16198==    by 0x1664B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16198==    by 0x1664B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16198==    by 0x16555120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16198==    by 0x1219A0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x1219F49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x121A02C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x1219718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x121D1627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16198==    by 0x12DF6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16198==    by 0xF1782D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16198==    by 0xF178327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16198==    by 0x4022144: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16198==    by 0x401C8E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16198==    by 0x401F36E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16198==    by 0x401F201: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16198==    by 0x401F8FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16198==    by 0x401AD38: main (TestPeriodicNodeBasedCellPopulationParallelMethods.cpp:18)
==16198== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16198== 
==16198== HEAP SUMMARY:
==16198==     in use at exit: 126,486 bytes in 902 blocks
==16198==   total heap usage: 33,319 allocs, 32,417 frees, 10,904,927 bytes allocated
==16198== 
==16198== LEAK SUMMARY:
==16198==    definitely lost: 0 bytes in 0 blocks
==16198==    indirectly lost: 0 bytes in 0 blocks
==16198==      possibly lost: 0 bytes in 0 blocks
==16198==    still reachable: 11,981 bytes in 45 blocks
==16198==         suppressed: 114,505 bytes in 857 blocks
==16198== Reachable blocks (those to which a pointer was found) are not shown.
==16198== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==16198== 
==16198== For lists of detected and suppressed errors, rerun with: -s
==16198== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)