==15853== Memcheck, a memory error detector ==15853== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==15853== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==15853== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestChebyshevIteration -malloc_debug -malloc_dump -memory_info ==15853== Parent PID: 15664 ==15853== ==15853== ==15853== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==15853== Open file descriptor 10: /dev/shm/open_mpi.0000 ==15853== at 0x6633536: __open_nocancel (open64_nocancel.c:39) ==15853== by 0x65B7BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==15853== by 0xA1B589E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15853== by 0xA1B5A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15853== by 0xA1B4C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15853== by 0xA1B4F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15853== by 0xA084159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15853== by 0x8D3D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D4249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D432C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D3A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D74627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x51BA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15853== by 0x61D289B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15853== by 0x61D28E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15853== by 0x400D2BC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15853== by 0x40084ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15853== by 0x400B028: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15853== by 0x400AE56: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15853== by 0x400B59B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15853== by 0x40068B2: main (TestChebyshevIteration.cpp:19) ==15853== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15853== Open file descriptor 9: ==15853== at 0x664196B: eventfd (syscall-template.S:120) ==15853== by 0xA655188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15853== by 0xA653395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15853== by 0xA653704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15853== by 0xA6539F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15853== by 0xA17A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15853== by 0xA17A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15853== by 0xA084120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15853== by 0x8D3D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D4249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D432C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D3A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D74627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x51BA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15853== by 0x61D289B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15853== by 0x61D28E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15853== by 0x400D2BC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15853== by 0x40084ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15853== by 0x400B028: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15853== by 0x400AE56: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15853== by 0x400B59B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15853== by 0x40068B2: main (TestChebyshevIteration.cpp:19) ==15853== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15853== Open file descriptor 8: ==15853== at 0x66322BB: pipe2 (syscall-template.S:120) ==15853== by 0xA654F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15853== by 0xA657579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15853== by 0xA657774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15853== by 0xA6538AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15853== by 0xA17A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15853== by 0xA17A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15853== by 0xA084120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15853== by 0x8D3D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D4249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D432C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D3A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D74627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x51BA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15853== by 0x61D289B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15853== by 0x61D28E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15853== by 0x400D2BC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15853== by 0x40084ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15853== by 0x400B028: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15853== by 0x400AE56: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15853== by 0x400B59B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15853== by 0x40068B2: main (TestChebyshevIteration.cpp:19) ==15853== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15853== Open file descriptor 7: ==15853== at 0x66322BB: pipe2 (syscall-template.S:120) ==15853== by 0xA654F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15853== by 0xA657579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15853== by 0xA657774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15853== by 0xA6538AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15853== by 0xA17A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15853== by 0xA17A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15853== by 0xA084120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15853== by 0x8D3D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D4249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D432C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D3A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D74627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x51BA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15853== by 0x61D289B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15853== by 0x61D28E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15853== by 0x400D2BC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15853== by 0x40084ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15853== by 0x400B028: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15853== by 0x400AE56: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15853== by 0x400B59B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15853== by 0x40068B2: main (TestChebyshevIteration.cpp:19) ==15853== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15853== Open file descriptor 6: ==15853== at 0x664246B: epoll_create1 (syscall-template.S:120) ==15853== by 0xA6576FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15853== by 0xA6538AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15853== by 0xA17A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15853== by 0xA17A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15853== by 0xA084120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15853== by 0x8D3D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D4249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D432C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D3A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x8D74627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15853== by 0x51BA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15853== by 0x61D289B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15853== by 0x61D28E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15853== by 0x400D2BC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15853== by 0x40084ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15853== by 0x400B028: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15853== by 0x400AE56: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15853== by 0x400B59B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15853== by 0x40068B2: main (TestChebyshevIteration.cpp:19) ==15853== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15853== ==15853== HEAP SUMMARY: ==15853== in use at exit: 124,558 bytes in 897 blocks ==15853== total heap usage: 29,061 allocs, 28,164 frees, 26,654,819 bytes allocated ==15853== ==15853== LEAK SUMMARY: ==15853== definitely lost: 0 bytes in 0 blocks ==15853== indirectly lost: 0 bytes in 0 blocks ==15853== possibly lost: 0 bytes in 0 blocks ==15853== still reachable: 10,081 bytes in 40 blocks ==15853== suppressed: 114,477 bytes in 857 blocks ==15853== Reachable blocks (those to which a pointer was found) are not shown. ==15853== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==15853== ==15853== For lists of detected and suppressed errors, rerun with: -s ==15853== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)