==14867== Memcheck, a memory error detector ==14867== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==14867== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==14867== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptStatistics -malloc_debug -malloc_dump -memory_info ==14867== Parent PID: 14421 ==14867== ==14867== ==14867== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==14867== Open file descriptor 10: /dev/shm/open_mpi.0000 ==14867== at 0x15014536: __open_nocancel (open64_nocancel.c:39) ==14867== by 0x14F98BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==14867== by 0x1A58689E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14867== by 0x1A586A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14867== by 0x1A585C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14867== by 0x1A585F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14867== by 0x1A455159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14867== by 0x147CB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x147D049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x147D12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x147C818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x14802627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14867== by 0x1470289B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14867== by 0x147028E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14867== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14867== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14867== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14867== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14867== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14867== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14867== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14867== Open file descriptor 9: ==14867== at 0x1502296B: eventfd (syscall-template.S:120) ==14867== by 0x1A5E6188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14867== by 0x1A5E4395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14867== by 0x1A5E4704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14867== by 0x1A5E49F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14867== by 0x1A54B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14867== by 0x1A54B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14867== by 0x1A455120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14867== by 0x147CB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x147D049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x147D12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x147C818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x14802627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14867== by 0x1470289B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14867== by 0x147028E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14867== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14867== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14867== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14867== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14867== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14867== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14867== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14867== Open file descriptor 8: ==14867== at 0x150132BB: pipe2 (syscall-template.S:120) ==14867== by 0x1A5E5F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14867== by 0x1A5E8579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14867== by 0x1A5E8774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14867== by 0x1A5E48AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14867== by 0x1A54B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14867== by 0x1A54B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14867== by 0x1A455120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14867== by 0x147CB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x147D049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x147D12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x147C818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x14802627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14867== by 0x1470289B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14867== by 0x147028E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14867== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14867== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14867== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14867== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14867== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14867== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14867== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14867== Open file descriptor 7: ==14867== at 0x150132BB: pipe2 (syscall-template.S:120) ==14867== by 0x1A5E5F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14867== by 0x1A5E8579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14867== by 0x1A5E8774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14867== by 0x1A5E48AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14867== by 0x1A54B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14867== by 0x1A54B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14867== by 0x1A455120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14867== by 0x147CB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x147D049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x147D12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x147C818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x14802627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14867== by 0x1470289B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14867== by 0x147028E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14867== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14867== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14867== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14867== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14867== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14867== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14867== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14867== Open file descriptor 6: ==14867== at 0x1502346B: epoll_create1 (syscall-template.S:120) ==14867== by 0x1A5E86FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14867== by 0x1A5E48AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14867== by 0x1A54B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14867== by 0x1A54B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14867== by 0x1A455120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14867== by 0x147CB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x147D049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x147D12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x147C818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x14802627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14867== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14867== by 0x1470289B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14867== by 0x147028E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14867== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14867== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14867== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14867== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14867== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14867== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14867== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14867== ==14867== HEAP SUMMARY: ==14867== in use at exit: 126,431 bytes in 901 blocks ==14867== total heap usage: 1,799,846 allocs, 1,798,945 frees, 118,240,669 bytes allocated ==14867== ==14867== LEAK SUMMARY: ==14867== definitely lost: 0 bytes in 0 blocks ==14867== indirectly lost: 0 bytes in 0 blocks ==14867== possibly lost: 0 bytes in 0 blocks ==14867== still reachable: 11,957 bytes in 44 blocks ==14867== suppressed: 114,474 bytes in 857 blocks ==14867== Reachable blocks (those to which a pointer was found) are not shown. ==14867== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==14867== ==14867== For lists of detected and suppressed errors, rerun with: -s ==14867== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)