==14535== Memcheck, a memory error detector ==14535== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==14535== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==14535== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestShovingCaBasedDivisionRules -malloc_debug -malloc_dump -memory_info ==14535== Parent PID: 14421 ==14535== ==14535== ==14535== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==14535== Open file descriptor 10: /dev/shm/open_mpi.0000 ==14535== at 0x13237536: __open_nocancel (open64_nocancel.c:39) ==14535== by 0x131BBBC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==14535== by 0x1863E89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14535== by 0x1863EA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14535== by 0x1863DC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14535== by 0x1863DF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14535== by 0x1850D159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14535== by 0x12AD20E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12AD749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12AD82C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12ACF18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12B09627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x6AD9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14535== by 0x12A0789B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14535== by 0x12A078E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14535== by 0x4024D43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14535== by 0x401F0B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14535== by 0x40220DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14535== by 0x4021F02: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14535== by 0x40226AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14535== by 0x401D0E8: main (TestShovingCaBasedDivisionRules.cpp:19) ==14535== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14535== Open file descriptor 9: ==14535== at 0x1324596B: eventfd (syscall-template.S:120) ==14535== by 0x1869E188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14535== by 0x1869C395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14535== by 0x1869C704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14535== by 0x1869C9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14535== by 0x186030D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14535== by 0x186031E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14535== by 0x1850D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14535== by 0x12AD20E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12AD749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12AD82C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12ACF18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12B09627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x6AD9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14535== by 0x12A0789B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14535== by 0x12A078E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14535== by 0x4024D43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14535== by 0x401F0B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14535== by 0x40220DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14535== by 0x4021F02: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14535== by 0x40226AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14535== by 0x401D0E8: main (TestShovingCaBasedDivisionRules.cpp:19) ==14535== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14535== Open file descriptor 8: ==14535== at 0x132362BB: pipe2 (syscall-template.S:120) ==14535== by 0x1869DF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14535== by 0x186A0579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14535== by 0x186A0774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14535== by 0x1869C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14535== by 0x186030D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14535== by 0x186031E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14535== by 0x1850D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14535== by 0x12AD20E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12AD749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12AD82C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12ACF18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12B09627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x6AD9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14535== by 0x12A0789B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14535== by 0x12A078E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14535== by 0x4024D43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14535== by 0x401F0B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14535== by 0x40220DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14535== by 0x4021F02: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14535== by 0x40226AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14535== by 0x401D0E8: main (TestShovingCaBasedDivisionRules.cpp:19) ==14535== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14535== Open file descriptor 7: ==14535== at 0x132362BB: pipe2 (syscall-template.S:120) ==14535== by 0x1869DF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14535== by 0x186A0579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14535== by 0x186A0774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14535== by 0x1869C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14535== by 0x186030D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14535== by 0x186031E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14535== by 0x1850D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14535== by 0x12AD20E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12AD749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12AD82C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12ACF18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12B09627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x6AD9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14535== by 0x12A0789B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14535== by 0x12A078E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14535== by 0x4024D43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14535== by 0x401F0B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14535== by 0x40220DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14535== by 0x4021F02: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14535== by 0x40226AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14535== by 0x401D0E8: main (TestShovingCaBasedDivisionRules.cpp:19) ==14535== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14535== Open file descriptor 5: ==14535== at 0x1324646B: epoll_create1 (syscall-template.S:120) ==14535== by 0x186A06FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14535== by 0x1869C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14535== by 0x186030D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14535== by 0x186031E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14535== by 0x1850D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14535== by 0x12AD20E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12AD749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12AD82C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12ACF18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x12B09627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14535== by 0x6AD9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14535== by 0x12A0789B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14535== by 0x12A078E9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14535== by 0x4024D43: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14535== by 0x401F0B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14535== by 0x40220DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14535== by 0x4021F02: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14535== by 0x40226AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14535== by 0x401D0E8: main (TestShovingCaBasedDivisionRules.cpp:19) ==14535== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14535== ==14535== HEAP SUMMARY: ==14535== in use at exit: 126,491 bytes in 903 blocks ==14535== total heap usage: 38,047 allocs, 37,144 frees, 11,213,202 bytes allocated ==14535== ==14535== LEAK SUMMARY: ==14535== definitely lost: 0 bytes in 0 blocks ==14535== indirectly lost: 0 bytes in 0 blocks ==14535== possibly lost: 0 bytes in 0 blocks ==14535== still reachable: 12,005 bytes in 46 blocks ==14535== suppressed: 114,486 bytes in 857 blocks ==14535== Reachable blocks (those to which a pointer was found) are not shown. ==14535== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==14535== ==14535== For lists of detected and suppressed errors, rerun with: -s ==14535== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)