==14198== Memcheck, a memory error detector ==14198== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==14198== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==14198== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptStatistics -malloc_debug -malloc_dump -memory_info ==14198== Parent PID: 13694 ==14198== ==14198== ==14198== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==14198== Open file descriptor 10: /dev/shm/open_mpi.0000 ==14198== at 0x151E2536: __open_nocancel (open64_nocancel.c:39) ==14198== by 0x15166BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==14198== by 0x1A75489E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14198== by 0x1A754A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14198== by 0x1A753C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14198== by 0x1A753F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14198== by 0x1A623159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14198== by 0x149990E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x1499E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x1499F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x1499618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x149D0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14198== by 0x148D12D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14198== by 0x148D1327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14198== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14198== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14198== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14198== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14198== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14198== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14198== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14198== Open file descriptor 9: ==14198== at 0x151F096B: eventfd (syscall-template.S:120) ==14198== by 0x1A7B4188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14198== by 0x1A7B2395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14198== by 0x1A7B2704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14198== by 0x1A7B29F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14198== by 0x1A7190D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14198== by 0x1A7191E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14198== by 0x1A623120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14198== by 0x149990E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x1499E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x1499F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x1499618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x149D0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14198== by 0x148D12D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14198== by 0x148D1327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14198== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14198== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14198== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14198== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14198== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14198== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14198== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14198== Open file descriptor 8: ==14198== at 0x151E12BB: pipe2 (syscall-template.S:120) ==14198== by 0x1A7B3F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14198== by 0x1A7B6579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14198== by 0x1A7B6774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14198== by 0x1A7B28AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14198== by 0x1A7190D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14198== by 0x1A7191E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14198== by 0x1A623120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14198== by 0x149990E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x1499E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x1499F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x1499618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x149D0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14198== by 0x148D12D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14198== by 0x148D1327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14198== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14198== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14198== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14198== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14198== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14198== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14198== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14198== Open file descriptor 7: ==14198== at 0x151E12BB: pipe2 (syscall-template.S:120) ==14198== by 0x1A7B3F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14198== by 0x1A7B6579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14198== by 0x1A7B6774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14198== by 0x1A7B28AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14198== by 0x1A7190D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14198== by 0x1A7191E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14198== by 0x1A623120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14198== by 0x149990E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x1499E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x1499F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x1499618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x149D0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14198== by 0x148D12D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14198== by 0x148D1327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14198== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14198== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14198== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14198== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14198== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14198== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14198== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14198== Open file descriptor 6: ==14198== at 0x151F146B: epoll_create1 (syscall-template.S:120) ==14198== by 0x1A7B66FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14198== by 0x1A7B28AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14198== by 0x1A7190D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14198== by 0x1A7191E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14198== by 0x1A623120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14198== by 0x149990E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x1499E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x1499F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x1499618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x149D0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14198== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14198== by 0x148D12D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14198== by 0x148D1327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14198== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14198== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14198== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14198== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14198== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14198== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==14198== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14198== ==14198== HEAP SUMMARY: ==14198== in use at exit: 126,431 bytes in 901 blocks ==14198== total heap usage: 1,799,933 allocs, 1,799,032 frees, 118,248,637 bytes allocated ==14198== ==14198== LEAK SUMMARY: ==14198== definitely lost: 0 bytes in 0 blocks ==14198== indirectly lost: 0 bytes in 0 blocks ==14198== possibly lost: 0 bytes in 0 blocks ==14198== still reachable: 11,957 bytes in 44 blocks ==14198== suppressed: 114,474 bytes in 857 blocks ==14198== Reachable blocks (those to which a pointer was found) are not shown. ==14198== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==14198== ==14198== For lists of detected and suppressed errors, rerun with: -s ==14198== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)