==15675== Memcheck, a memory error detector ==15675== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==15675== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==15675== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestConstBoundaryCondition -malloc_debug -malloc_dump -memory_info ==15675== Parent PID: 14891 ==15675== ==15675== ==15675== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==15675== Open file descriptor 10: /dev/shm/open_mpi.0000 ==15675== at 0x6CAB536: __open_nocancel (open64_nocancel.c:39) ==15675== by 0x6C2FBC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==15675== by 0xD67189E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15675== by 0xD671A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15675== by 0xD670C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15675== by 0xD670F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15675== by 0xD540159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15675== by 0x6F280E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F2D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F2E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F2518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F5F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x7F11446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15675== by 0x684B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15675== by 0x684B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15675== by 0x4009E92: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15675== by 0x4005BA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15675== by 0x4007EE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15675== by 0x4007D81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15675== by 0x400842F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15675== by 0x4004392: main (TestConstBoundaryCondition.cpp:18) ==15675== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15675== Open file descriptor 9: ==15675== at 0x6CB996B: eventfd (syscall-template.S:120) ==15675== by 0xD6D3188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15675== by 0xD6D1395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15675== by 0xD6D1704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15675== by 0xD6D19F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15675== by 0xD6360D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15675== by 0xD6361E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15675== by 0xD540120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15675== by 0x6F280E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F2D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F2E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F2518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F5F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x7F11446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15675== by 0x684B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15675== by 0x684B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15675== by 0x4009E92: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15675== by 0x4005BA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15675== by 0x4007EE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15675== by 0x4007D81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15675== by 0x400842F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15675== by 0x4004392: main (TestConstBoundaryCondition.cpp:18) ==15675== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15675== Open file descriptor 8: ==15675== at 0x6CAA2BB: pipe2 (syscall-template.S:120) ==15675== by 0xD6D2F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15675== by 0xD6D5579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15675== by 0xD6D5774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15675== by 0xD6D18AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15675== by 0xD6360D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15675== by 0xD6361E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15675== by 0xD540120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15675== by 0x6F280E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F2D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F2E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F2518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F5F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x7F11446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15675== by 0x684B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15675== by 0x684B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15675== by 0x4009E92: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15675== by 0x4005BA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15675== by 0x4007EE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15675== by 0x4007D81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15675== by 0x400842F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15675== by 0x4004392: main (TestConstBoundaryCondition.cpp:18) ==15675== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15675== Open file descriptor 7: ==15675== at 0x6CAA2BB: pipe2 (syscall-template.S:120) ==15675== by 0xD6D2F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15675== by 0xD6D5579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15675== by 0xD6D5774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15675== by 0xD6D18AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15675== by 0xD6360D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15675== by 0xD6361E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15675== by 0xD540120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15675== by 0x6F280E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F2D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F2E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F2518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F5F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x7F11446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15675== by 0x684B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15675== by 0x684B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15675== by 0x4009E92: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15675== by 0x4005BA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15675== by 0x4007EE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15675== by 0x4007D81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15675== by 0x400842F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15675== by 0x4004392: main (TestConstBoundaryCondition.cpp:18) ==15675== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15675== Open file descriptor 6: ==15675== at 0x6CBA46B: epoll_create1 (syscall-template.S:120) ==15675== by 0xD6D56FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15675== by 0xD6D18AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15675== by 0xD6360D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15675== by 0xD6361E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15675== by 0xD540120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15675== by 0x6F280E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F2D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F2E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F2518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x6F5F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15675== by 0x7F11446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15675== by 0x684B2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15675== by 0x684B327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15675== by 0x4009E92: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15675== by 0x4005BA3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15675== by 0x4007EE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15675== by 0x4007D81: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15675== by 0x400842F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15675== by 0x4004392: main (TestConstBoundaryCondition.cpp:18) ==15675== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15675== ==15675== HEAP SUMMARY: ==15675== in use at exit: 126,390 bytes in 901 blocks ==15675== total heap usage: 27,380 allocs, 26,479 frees, 10,373,262 bytes allocated ==15675== ==15675== LEAK SUMMARY: ==15675== definitely lost: 0 bytes in 0 blocks ==15675== indirectly lost: 0 bytes in 0 blocks ==15675== possibly lost: 0 bytes in 0 blocks ==15675== still reachable: 11,909 bytes in 44 blocks ==15675== suppressed: 114,481 bytes in 857 blocks ==15675== Reachable blocks (those to which a pointer was found) are not shown. ==15675== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==15675== ==15675== For lists of detected and suppressed errors, rerun with: -s ==15675== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)