==12836== Memcheck, a memory error detector
==12836== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==12836== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==12836== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexCryptBoundaryForce -malloc_debug -malloc_dump -memory_info
==12836== Parent PID: 12795
==12836== 
==12836== 
==12836== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==12836== Open file descriptor 10: /dev/shm/open_mpi.0000
==12836==    at 0x13342536: __open_nocancel (open64_nocancel.c:39)
==12836==    by 0x132C6BC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==12836==    by 0x1816089E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12836==    by 0x18160A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12836==    by 0x1815FC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12836==    by 0x1815FF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12836==    by 0x1802F159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12836==    by 0x13D580E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D5D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D5E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D5518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D8F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x1496F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12836==    by 0x12F052D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12836==    by 0x12F05327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12836==    by 0x401D8A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==12836==    by 0x4015E81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12836==    by 0x4018E8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12836==    by 0x4018CB2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12836==    by 0x401945B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12836==    by 0x4013EB8: main (TestVertexCryptBoundaryForce.cpp:19)
==12836== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12836== Open file descriptor 9:
==12836==    at 0x1335096B: eventfd (syscall-template.S:120)
==12836==    by 0x181C0188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12836==    by 0x181BE395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12836==    by 0x181BE704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12836==    by 0x181BE9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12836==    by 0x181250D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12836==    by 0x181251E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12836==    by 0x1802F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12836==    by 0x13D580E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D5D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D5E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D5518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D8F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x1496F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12836==    by 0x12F052D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12836==    by 0x12F05327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12836==    by 0x401D8A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==12836==    by 0x4015E81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12836==    by 0x4018E8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12836==    by 0x4018CB2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12836==    by 0x401945B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12836==    by 0x4013EB8: main (TestVertexCryptBoundaryForce.cpp:19)
==12836== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12836== Open file descriptor 8:
==12836==    at 0x133412BB: pipe2 (syscall-template.S:120)
==12836==    by 0x181BFF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12836==    by 0x181C2579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12836==    by 0x181C2774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12836==    by 0x181BE8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12836==    by 0x181250D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12836==    by 0x181251E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12836==    by 0x1802F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12836==    by 0x13D580E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D5D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D5E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D5518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D8F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x1496F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12836==    by 0x12F052D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12836==    by 0x12F05327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12836==    by 0x401D8A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==12836==    by 0x4015E81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12836==    by 0x4018E8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12836==    by 0x4018CB2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12836==    by 0x401945B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12836==    by 0x4013EB8: main (TestVertexCryptBoundaryForce.cpp:19)
==12836== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12836== Open file descriptor 7:
==12836==    at 0x133412BB: pipe2 (syscall-template.S:120)
==12836==    by 0x181BFF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12836==    by 0x181C2579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12836==    by 0x181C2774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12836==    by 0x181BE8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12836==    by 0x181250D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12836==    by 0x181251E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12836==    by 0x1802F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12836==    by 0x13D580E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D5D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D5E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D5518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D8F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x1496F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12836==    by 0x12F052D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12836==    by 0x12F05327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12836==    by 0x401D8A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==12836==    by 0x4015E81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12836==    by 0x4018E8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12836==    by 0x4018CB2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12836==    by 0x401945B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12836==    by 0x4013EB8: main (TestVertexCryptBoundaryForce.cpp:19)
==12836== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12836== Open file descriptor 5:
==12836==    at 0x1335146B: epoll_create1 (syscall-template.S:120)
==12836==    by 0x181C26FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12836==    by 0x181BE8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12836==    by 0x181250D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12836==    by 0x181251E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12836==    by 0x1802F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12836==    by 0x13D580E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D5D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D5E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D5518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x13D8F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12836==    by 0x1496F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12836==    by 0x12F052D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12836==    by 0x12F05327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12836==    by 0x401D8A4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==12836==    by 0x4015E81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12836==    by 0x4018E8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12836==    by 0x4018CB2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12836==    by 0x401945B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12836==    by 0x4013EB8: main (TestVertexCryptBoundaryForce.cpp:19)
==12836== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12836== 
==12836== HEAP SUMMARY:
==12836==     in use at exit: 105,377 bytes in 646 blocks
==12836==   total heap usage: 36,275 allocs, 35,629 frees, 9,211,912 bytes allocated
==12836== 
==12836== LEAK SUMMARY:
==12836==    definitely lost: 0 bytes in 0 blocks
==12836==    indirectly lost: 0 bytes in 0 blocks
==12836==      possibly lost: 0 bytes in 0 blocks
==12836==    still reachable: 11,989 bytes in 45 blocks
==12836==         suppressed: 93,388 bytes in 601 blocks
==12836== Reachable blocks (those to which a pointer was found) are not shown.
==12836== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==12836== 
==12836== For lists of detected and suppressed errors, rerun with: -s
==12836== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)