==13963== Memcheck, a memory error detector
==13963== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==13963== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==13963== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainWithSvi -malloc_debug -malloc_dump -memory_info
==13963== Parent PID: 13923
==13963== 
==13963== 
==13963== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==13963== Open file descriptor 10: /dev/shm/open_mpi.0000
==13963==    at 0xC671536: __open_nocancel (open64_nocancel.c:39)
==13963==    by 0xC5F5BC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==13963==    by 0x10F1789E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13963==    by 0x10F17A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13963==    by 0x10F16C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13963==    by 0x10F16F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13963==    by 0x10DE6159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13963==    by 0xC9BD0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9C249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9C32C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9BA18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9F4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xD9A6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==13963==    by 0xC2272D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==13963==    by 0xC227327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==13963==    by 0x4018824: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==13963==    by 0x40138A1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==13963==    by 0x401610E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==13963==    by 0x4015FA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==13963==    by 0x401669B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==13963==    by 0x4011CF8: main (TestBidomainWithSvi.cpp:18)
==13963== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==13963== Open file descriptor 9:
==13963==    at 0xC67F96B: eventfd (syscall-template.S:120)
==13963==    by 0x10F79188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13963==    by 0x10F77395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13963==    by 0x10F77704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13963==    by 0x10F779F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13963==    by 0x10EDC0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13963==    by 0x10EDC1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13963==    by 0x10DE6120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13963==    by 0xC9BD0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9C249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9C32C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9BA18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9F4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xD9A6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==13963==    by 0xC2272D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==13963==    by 0xC227327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==13963==    by 0x4018824: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==13963==    by 0x40138A1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==13963==    by 0x401610E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==13963==    by 0x4015FA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==13963==    by 0x401669B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==13963==    by 0x4011CF8: main (TestBidomainWithSvi.cpp:18)
==13963== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==13963== Open file descriptor 8:
==13963==    at 0xC6702BB: pipe2 (syscall-template.S:120)
==13963==    by 0x10F78F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13963==    by 0x10F7B579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13963==    by 0x10F7B774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13963==    by 0x10F778AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13963==    by 0x10EDC0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13963==    by 0x10EDC1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13963==    by 0x10DE6120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13963==    by 0xC9BD0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9C249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9C32C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9BA18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9F4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xD9A6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==13963==    by 0xC2272D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==13963==    by 0xC227327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==13963==    by 0x4018824: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==13963==    by 0x40138A1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==13963==    by 0x401610E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==13963==    by 0x4015FA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==13963==    by 0x401669B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==13963==    by 0x4011CF8: main (TestBidomainWithSvi.cpp:18)
==13963== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==13963== Open file descriptor 7:
==13963==    at 0xC6702BB: pipe2 (syscall-template.S:120)
==13963==    by 0x10F78F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13963==    by 0x10F7B579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13963==    by 0x10F7B774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13963==    by 0x10F778AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13963==    by 0x10EDC0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13963==    by 0x10EDC1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13963==    by 0x10DE6120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13963==    by 0xC9BD0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9C249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9C32C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9BA18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9F4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xD9A6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==13963==    by 0xC2272D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==13963==    by 0xC227327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==13963==    by 0x4018824: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==13963==    by 0x40138A1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==13963==    by 0x401610E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==13963==    by 0x4015FA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==13963==    by 0x401669B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==13963==    by 0x4011CF8: main (TestBidomainWithSvi.cpp:18)
==13963== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==13963== Open file descriptor 4:
==13963==    at 0xC68046B: epoll_create1 (syscall-template.S:120)
==13963==    by 0x10F7B6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13963==    by 0x10F778AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13963==    by 0x10EDC0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13963==    by 0x10EDC1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13963==    by 0x10DE6120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13963==    by 0xC9BD0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9C249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9C32C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9BA18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xC9F4627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13963==    by 0xD9A6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==13963==    by 0xC2272D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==13963==    by 0xC227327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==13963==    by 0x4018824: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==13963==    by 0x40138A1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==13963==    by 0x401610E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==13963==    by 0x4015FA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==13963==    by 0x401669B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==13963==    by 0x4011CF8: main (TestBidomainWithSvi.cpp:18)
==13963== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==13963== 
==13963== HEAP SUMMARY:
==13963==     in use at exit: 127,377 bytes in 914 blocks
==13963==   total heap usage: 3,301,490 allocs, 3,300,576 frees, 742,535,368 bytes allocated
==13963== 
==13963== LEAK SUMMARY:
==13963==    definitely lost: 0 bytes in 0 blocks
==13963==    indirectly lost: 0 bytes in 0 blocks
==13963==      possibly lost: 0 bytes in 0 blocks
==13963==    still reachable: 11,957 bytes in 44 blocks
==13963==         suppressed: 115,420 bytes in 870 blocks
==13963== Reachable blocks (those to which a pointer was found) are not shown.
==13963== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==13963== 
==13963== For lists of detected and suppressed errors, rerun with: -s
==13963== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 72 from 34)