==13408== Memcheck, a memory error detector ==13408== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==13408== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==13408== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptProjectionStatistics -malloc_debug -malloc_dump -memory_info ==13408== Parent PID: 12917 ==13408== ==13408== ==13408== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==13408== Open file descriptor 10: /dev/shm/open_mpi.0000 ==13408== at 0x15041536: __open_nocancel (open64_nocancel.c:39) ==13408== by 0x14FC5BC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==13408== by 0x1A66889E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13408== by 0x1A668A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13408== by 0x1A667C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13408== by 0x1A667F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13408== by 0x1A537159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13408== by 0x147FA0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x147FF49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x148002C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x147F718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x14831627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x6A5D446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13408== by 0x147302D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13408== by 0x14730327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13408== by 0x401F083: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13408== by 0x4019981: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13408== by 0x401C33E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13408== by 0x401C1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13408== by 0x401C8CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13408== by 0x4017DD8: main (TestCryptProjectionStatistics.cpp:18) ==13408== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13408== Open file descriptor 9: ==13408== at 0x1504F96B: eventfd (syscall-template.S:120) ==13408== by 0x1A6C8188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13408== by 0x1A6C6395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13408== by 0x1A6C6704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13408== by 0x1A6C69F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13408== by 0x1A62D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13408== by 0x1A62D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13408== by 0x1A537120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13408== by 0x147FA0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x147FF49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x148002C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x147F718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x14831627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x6A5D446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13408== by 0x147302D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13408== by 0x14730327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13408== by 0x401F083: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13408== by 0x4019981: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13408== by 0x401C33E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13408== by 0x401C1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13408== by 0x401C8CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13408== by 0x4017DD8: main (TestCryptProjectionStatistics.cpp:18) ==13408== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13408== Open file descriptor 8: ==13408== at 0x150402BB: pipe2 (syscall-template.S:120) ==13408== by 0x1A6C7F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13408== by 0x1A6CA579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13408== by 0x1A6CA774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13408== by 0x1A6C68AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13408== by 0x1A62D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13408== by 0x1A62D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13408== by 0x1A537120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13408== by 0x147FA0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x147FF49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x148002C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x147F718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x14831627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x6A5D446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13408== by 0x147302D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13408== by 0x14730327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13408== by 0x401F083: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13408== by 0x4019981: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13408== by 0x401C33E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13408== by 0x401C1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13408== by 0x401C8CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13408== by 0x4017DD8: main (TestCryptProjectionStatistics.cpp:18) ==13408== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13408== Open file descriptor 7: ==13408== at 0x150402BB: pipe2 (syscall-template.S:120) ==13408== by 0x1A6C7F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13408== by 0x1A6CA579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13408== by 0x1A6CA774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13408== by 0x1A6C68AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13408== by 0x1A62D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13408== by 0x1A62D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13408== by 0x1A537120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13408== by 0x147FA0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x147FF49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x148002C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x147F718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x14831627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x6A5D446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13408== by 0x147302D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13408== by 0x14730327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13408== by 0x401F083: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13408== by 0x4019981: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13408== by 0x401C33E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13408== by 0x401C1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13408== by 0x401C8CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13408== by 0x4017DD8: main (TestCryptProjectionStatistics.cpp:18) ==13408== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13408== Open file descriptor 6: ==13408== at 0x1505046B: epoll_create1 (syscall-template.S:120) ==13408== by 0x1A6CA6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13408== by 0x1A6C68AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13408== by 0x1A62D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13408== by 0x1A62D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13408== by 0x1A537120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13408== by 0x147FA0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x147FF49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x148002C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x147F718F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x14831627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13408== by 0x6A5D446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13408== by 0x147302D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13408== by 0x14730327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13408== by 0x401F083: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13408== by 0x4019981: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13408== by 0x401C33E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13408== by 0x401C1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13408== by 0x401C8CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13408== by 0x4017DD8: main (TestCryptProjectionStatistics.cpp:18) ==13408== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13408== ==13408== HEAP SUMMARY: ==13408== in use at exit: 126,474 bytes in 902 blocks ==13408== total heap usage: 1,135,987 allocs, 1,135,085 frees, 76,566,047 bytes allocated ==13408== ==13408== LEAK SUMMARY: ==13408== definitely lost: 0 bytes in 0 blocks ==13408== indirectly lost: 0 bytes in 0 blocks ==13408== possibly lost: 0 bytes in 0 blocks ==13408== still reachable: 11,989 bytes in 45 blocks ==13408== suppressed: 114,485 bytes in 857 blocks ==13408== Reachable blocks (those to which a pointer was found) are not shown. ==13408== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==13408== ==13408== For lists of detected and suppressed errors, rerun with: -s ==13408== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)