==13439== Memcheck, a memory error detector ==13439== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==13439== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==13439== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptStatistics -malloc_debug -malloc_dump -memory_info ==13439== Parent PID: 12917 ==13439== ==13439== ==13439== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==13439== Open file descriptor 10: /dev/shm/open_mpi.0000 ==13439== at 0x151EA536: __open_nocancel (open64_nocancel.c:39) ==13439== by 0x1516EBC3: shm_open@@GLIBC_2.34 (shm_open.c:46) ==13439== by 0x1A75C89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13439== by 0x1A75CA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13439== by 0x1A75BC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13439== by 0x1A75BF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13439== by 0x1A62B159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13439== by 0x149A10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x149A649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x149A72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x1499E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x149D8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13439== by 0x148D92D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13439== by 0x148D9327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13439== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13439== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13439== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13439== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13439== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13439== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13439== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13439== Open file descriptor 9: ==13439== at 0x151F896B: eventfd (syscall-template.S:120) ==13439== by 0x1A7BC188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13439== by 0x1A7BA395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13439== by 0x1A7BA704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13439== by 0x1A7BA9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13439== by 0x1A7210D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13439== by 0x1A7211E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13439== by 0x1A62B120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13439== by 0x149A10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x149A649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x149A72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x1499E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x149D8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13439== by 0x148D92D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13439== by 0x148D9327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13439== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13439== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13439== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13439== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13439== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13439== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13439== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13439== Open file descriptor 8: ==13439== at 0x151E92BB: pipe2 (syscall-template.S:120) ==13439== by 0x1A7BBF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13439== by 0x1A7BE579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13439== by 0x1A7BE774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13439== by 0x1A7BA8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13439== by 0x1A7210D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13439== by 0x1A7211E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13439== by 0x1A62B120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13439== by 0x149A10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x149A649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x149A72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x1499E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x149D8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13439== by 0x148D92D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13439== by 0x148D9327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13439== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13439== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13439== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13439== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13439== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13439== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13439== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13439== Open file descriptor 7: ==13439== at 0x151E92BB: pipe2 (syscall-template.S:120) ==13439== by 0x1A7BBF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13439== by 0x1A7BE579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13439== by 0x1A7BE774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13439== by 0x1A7BA8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13439== by 0x1A7210D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13439== by 0x1A7211E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13439== by 0x1A62B120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13439== by 0x149A10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x149A649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x149A72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x1499E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x149D8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13439== by 0x148D92D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13439== by 0x148D9327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13439== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13439== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13439== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13439== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13439== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13439== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13439== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13439== Open file descriptor 6: ==13439== at 0x151F946B: epoll_create1 (syscall-template.S:120) ==13439== by 0x1A7BE6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13439== by 0x1A7BA8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13439== by 0x1A7210D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13439== by 0x1A7211E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13439== by 0x1A62B120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13439== by 0x149A10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x149A649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x149A72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x1499E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x149D8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13439== by 0x6BBB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13439== by 0x148D92D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13439== by 0x148D9327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13439== by 0x40AF543: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13439== by 0x40A65D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13439== by 0x40AA53E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13439== by 0x40AA3D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13439== by 0x40AAACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13439== by 0x40A4A18: main (TestCryptStatistics.cpp:18) ==13439== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13439== ==13439== HEAP SUMMARY: ==13439== in use at exit: 126,432 bytes in 901 blocks ==13439== total heap usage: 1,799,934 allocs, 1,799,033 frees, 118,248,088 bytes allocated ==13439== ==13439== LEAK SUMMARY: ==13439== definitely lost: 0 bytes in 0 blocks ==13439== indirectly lost: 0 bytes in 0 blocks ==13439== possibly lost: 0 bytes in 0 blocks ==13439== still reachable: 11,957 bytes in 44 blocks ==13439== suppressed: 114,475 bytes in 857 blocks ==13439== Reachable blocks (those to which a pointer was found) are not shown. ==13439== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==13439== ==13439== For lists of detected and suppressed errors, rerun with: -s ==13439== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)