==12999== Memcheck, a memory error detector
==12999== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==12999== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==12999== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntConcentration -malloc_debug -malloc_dump -memory_info
==12999== Parent PID: 12969
==12999== 
==12999== 
==12999== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==12999== Open file descriptor 10: /dev/shm/open_mpi.0000
==12999==    at 0x150BC536: __open_nocancel (open64_nocancel.c:39)
==12999==    by 0x15040BC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==12999==    by 0x1A69E89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12999==    by 0x1A69EA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12999==    by 0x1A69DC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12999==    by 0x1A69DF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12999==    by 0x1A56D159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12999==    by 0x148750E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x1487A49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x1487B2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x1487218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x148AC627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x6B03446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12999==    by 0x147AD3B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12999==    by 0x147AD401: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12999==    by 0x403C673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==12999==    by 0x4036601: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12999==    by 0x4039A3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12999==    by 0x4039862: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12999==    by 0x403A00B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12999==    by 0x4034628: main (TestWntConcentration.cpp:19)
==12999== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12999== Open file descriptor 9:
==12999==    at 0x150CA96B: eventfd (syscall-template.S:120)
==12999==    by 0x1A6FE188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12999==    by 0x1A6FC395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12999==    by 0x1A6FC704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12999==    by 0x1A6FC9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12999==    by 0x1A6630D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12999==    by 0x1A6631E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12999==    by 0x1A56D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12999==    by 0x148750E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x1487A49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x1487B2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x1487218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x148AC627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x6B03446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12999==    by 0x147AD3B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12999==    by 0x147AD401: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12999==    by 0x403C673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==12999==    by 0x4036601: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12999==    by 0x4039A3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12999==    by 0x4039862: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12999==    by 0x403A00B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12999==    by 0x4034628: main (TestWntConcentration.cpp:19)
==12999== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12999== Open file descriptor 8:
==12999==    at 0x150BB2BB: pipe2 (syscall-template.S:120)
==12999==    by 0x1A6FDF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12999==    by 0x1A700579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12999==    by 0x1A700774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12999==    by 0x1A6FC8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12999==    by 0x1A6630D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12999==    by 0x1A6631E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12999==    by 0x1A56D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12999==    by 0x148750E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x1487A49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x1487B2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x1487218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x148AC627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x6B03446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12999==    by 0x147AD3B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12999==    by 0x147AD401: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12999==    by 0x403C673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==12999==    by 0x4036601: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12999==    by 0x4039A3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12999==    by 0x4039862: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12999==    by 0x403A00B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12999==    by 0x4034628: main (TestWntConcentration.cpp:19)
==12999== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12999== Open file descriptor 7:
==12999==    at 0x150BB2BB: pipe2 (syscall-template.S:120)
==12999==    by 0x1A6FDF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12999==    by 0x1A700579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12999==    by 0x1A700774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12999==    by 0x1A6FC8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12999==    by 0x1A6630D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12999==    by 0x1A6631E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12999==    by 0x1A56D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12999==    by 0x148750E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x1487A49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x1487B2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x1487218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x148AC627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x6B03446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12999==    by 0x147AD3B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12999==    by 0x147AD401: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12999==    by 0x403C673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==12999==    by 0x4036601: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12999==    by 0x4039A3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12999==    by 0x4039862: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12999==    by 0x403A00B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12999==    by 0x4034628: main (TestWntConcentration.cpp:19)
==12999== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12999== Open file descriptor 4:
==12999==    at 0x150CB46B: epoll_create1 (syscall-template.S:120)
==12999==    by 0x1A7006FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12999==    by 0x1A6FC8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==12999==    by 0x1A6630D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12999==    by 0x1A6631E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12999==    by 0x1A56D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==12999==    by 0x148750E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x1487A49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x1487B2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x1487218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x148AC627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==12999==    by 0x6B03446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==12999==    by 0x147AD3B3: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==12999==    by 0x147AD401: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==12999==    by 0x403C673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==12999==    by 0x4036601: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==12999==    by 0x4039A3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==12999==    by 0x4039862: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==12999==    by 0x403A00B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==12999==    by 0x4034628: main (TestWntConcentration.cpp:19)
==12999== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==12999== 
==12999== HEAP SUMMARY:
==12999==     in use at exit: 126,542 bytes in 903 blocks
==12999==   total heap usage: 37,001 allocs, 36,098 frees, 12,195,386 bytes allocated
==12999== 
==12999== LEAK SUMMARY:
==12999==    definitely lost: 0 bytes in 0 blocks
==12999==    indirectly lost: 0 bytes in 0 blocks
==12999==      possibly lost: 0 bytes in 0 blocks
==12999==    still reachable: 12,069 bytes in 46 blocks
==12999==         suppressed: 114,473 bytes in 857 blocks
==12999== Reachable blocks (those to which a pointer was found) are not shown.
==12999== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==12999== 
==12999== For lists of detected and suppressed errors, rerun with: -s
==12999== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)