==28239== Memcheck, a memory error detector
==28239== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==28239== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==28239== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellCycleModelTutorial -malloc_debug -malloc_dump -memory_info
==28239== Parent PID: 14797
==28239== 
==28239== 
==28239== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==28239== Open file descriptor 10: /dev/shm/open_mpi.0000
==28239==    at 0x1391A536: __open_nocancel (open64_nocancel.c:39)
==28239==    by 0x1389EBC3: shm_open@@GLIBC_2.34 (shm_open.c:46)
==28239==    by 0x18E5B89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28239==    by 0x18E5BA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28239==    by 0x18E5AC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28239==    by 0x18E5AF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28239==    by 0x18D2A159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28239==    by 0x10E3F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E4449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E452C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E3C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E76627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0xFE40446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==28239==    by 0xF4EB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==28239==    by 0xF4EB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==28239==    by 0x411CA73: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==28239==    by 0x4115941: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==28239==    by 0x411972E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==28239==    by 0x4119552: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==28239==    by 0x4119CFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==28239==    by 0x4111998: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19)
==28239== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==28239== Open file descriptor 9:
==28239==    at 0x1392896B: eventfd (syscall-template.S:120)
==28239==    by 0x18EBB188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28239==    by 0x18EB9395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28239==    by 0x18EB9704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28239==    by 0x18EB99F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28239==    by 0x18E200D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28239==    by 0x18E201E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28239==    by 0x18D2A120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28239==    by 0x10E3F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E4449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E452C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E3C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E76627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0xFE40446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==28239==    by 0xF4EB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==28239==    by 0xF4EB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==28239==    by 0x411CA73: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==28239==    by 0x4115941: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==28239==    by 0x411972E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==28239==    by 0x4119552: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==28239==    by 0x4119CFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==28239==    by 0x4111998: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19)
==28239== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==28239== Open file descriptor 8:
==28239==    at 0x139192BB: pipe2 (syscall-template.S:120)
==28239==    by 0x18EBAF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28239==    by 0x18EBD579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28239==    by 0x18EBD774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28239==    by 0x18EB98AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28239==    by 0x18E200D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28239==    by 0x18E201E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28239==    by 0x18D2A120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28239==    by 0x10E3F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E4449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E452C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E3C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E76627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0xFE40446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==28239==    by 0xF4EB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==28239==    by 0xF4EB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==28239==    by 0x411CA73: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==28239==    by 0x4115941: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==28239==    by 0x411972E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==28239==    by 0x4119552: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==28239==    by 0x4119CFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==28239==    by 0x4111998: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19)
==28239== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==28239== Open file descriptor 7:
==28239==    at 0x139192BB: pipe2 (syscall-template.S:120)
==28239==    by 0x18EBAF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28239==    by 0x18EBD579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28239==    by 0x18EBD774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28239==    by 0x18EB98AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28239==    by 0x18E200D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28239==    by 0x18E201E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28239==    by 0x18D2A120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28239==    by 0x10E3F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E4449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E452C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E3C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E76627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0xFE40446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==28239==    by 0xF4EB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==28239==    by 0xF4EB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==28239==    by 0x411CA73: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==28239==    by 0x4115941: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==28239==    by 0x411972E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==28239==    by 0x4119552: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==28239==    by 0x4119CFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==28239==    by 0x4111998: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19)
==28239== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==28239== Open file descriptor 4:
==28239==    at 0x1392946B: epoll_create1 (syscall-template.S:120)
==28239==    by 0x18EBD6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28239==    by 0x18EB98AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28239==    by 0x18E200D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28239==    by 0x18E201E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28239==    by 0x18D2A120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28239==    by 0x10E3F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E4449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E452C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E3C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0x10E76627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28239==    by 0xFE40446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==28239==    by 0xF4EB2D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==28239==    by 0xF4EB327: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==28239==    by 0x411CA73: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==28239==    by 0x4115941: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==28239==    by 0x411972E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==28239==    by 0x4119552: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==28239==    by 0x4119CFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==28239==    by 0x4111998: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19)
==28239== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==28239== 
==28239== HEAP SUMMARY:
==28239==     in use at exit: 126,409 bytes in 898 blocks
==28239==   total heap usage: 9,016,773 allocs, 9,015,875 frees, 873,799,859 bytes allocated
==28239== 
==28239== LEAK SUMMARY:
==28239==    definitely lost: 0 bytes in 0 blocks
==28239==    indirectly lost: 0 bytes in 0 blocks
==28239==      possibly lost: 0 bytes in 0 blocks
==28239==    still reachable: 11,981 bytes in 45 blocks
==28239==         suppressed: 114,428 bytes in 853 blocks
==28239== Reachable blocks (those to which a pointer was found) are not shown.
==28239== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==28239== 
==28239== For lists of detected and suppressed errors, rerun with: -s
==28239== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)