==15093== Memcheck, a memory error detector ==15093== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==15093== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==15093== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptStatistics -malloc_debug -malloc_dump -memory_info ==15093== Parent PID: 14623 ==15093== ==15093== ==15093== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==15093== Open file descriptor 10: /dev/shm/open_mpi.0000 ==15093== at 0x14CFD3B6: __open_nocancel (open64_nocancel.c:39) ==15093== by 0x14C81943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==15093== by 0x1A22989E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15093== by 0x1A229A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15093== by 0x1A228C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15093== by 0x1A228F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15093== by 0x1A0F8159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15093== by 0x144B40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144B949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144BA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144B118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144EB627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x6B02446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15093== by 0x1440F2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15093== by 0x1440F347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15093== by 0x40E2A63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15093== by 0x40D9AF1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15093== by 0x40DDA5E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15093== by 0x40DD8F1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15093== by 0x40DDFEB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15093== by 0x40D7F38: main (TestCryptStatistics.cpp:18) ==15093== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15093== Open file descriptor 9: ==15093== at 0x14D0B84B: eventfd (syscall-template.S:120) ==15093== by 0x1A28B188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15093== by 0x1A289395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15093== by 0x1A289704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15093== by 0x1A2899F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15093== by 0x1A1EE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15093== by 0x1A1EE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15093== by 0x1A0F8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15093== by 0x144B40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144B949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144BA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144B118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144EB627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x6B02446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15093== by 0x1440F2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15093== by 0x1440F347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15093== by 0x40E2A63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15093== by 0x40D9AF1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15093== by 0x40DDA5E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15093== by 0x40DD8F1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15093== by 0x40DDFEB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15093== by 0x40D7F38: main (TestCryptStatistics.cpp:18) ==15093== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15093== Open file descriptor 8: ==15093== at 0x14CFC13B: pipe2 (syscall-template.S:120) ==15093== by 0x1A28AF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15093== by 0x1A28D579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15093== by 0x1A28D774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15093== by 0x1A2898AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15093== by 0x1A1EE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15093== by 0x1A1EE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15093== by 0x1A0F8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15093== by 0x144B40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144B949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144BA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144B118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144EB627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x6B02446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15093== by 0x1440F2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15093== by 0x1440F347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15093== by 0x40E2A63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15093== by 0x40D9AF1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15093== by 0x40DDA5E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15093== by 0x40DD8F1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15093== by 0x40DDFEB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15093== by 0x40D7F38: main (TestCryptStatistics.cpp:18) ==15093== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15093== Open file descriptor 7: ==15093== at 0x14CFC13B: pipe2 (syscall-template.S:120) ==15093== by 0x1A28AF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15093== by 0x1A28D579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15093== by 0x1A28D774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15093== by 0x1A2898AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15093== by 0x1A1EE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15093== by 0x1A1EE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15093== by 0x1A0F8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15093== by 0x144B40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144B949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144BA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144B118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144EB627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x6B02446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15093== by 0x1440F2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15093== by 0x1440F347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15093== by 0x40E2A63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15093== by 0x40D9AF1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15093== by 0x40DDA5E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15093== by 0x40DD8F1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15093== by 0x40DDFEB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15093== by 0x40D7F38: main (TestCryptStatistics.cpp:18) ==15093== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15093== Open file descriptor 6: ==15093== at 0x14D0C34B: epoll_create1 (syscall-template.S:120) ==15093== by 0x1A28D6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15093== by 0x1A2898AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15093== by 0x1A1EE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15093== by 0x1A1EE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15093== by 0x1A0F8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15093== by 0x144B40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144B949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144BA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144B118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x144EB627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15093== by 0x6B02446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15093== by 0x1440F2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15093== by 0x1440F347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15093== by 0x40E2A63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15093== by 0x40D9AF1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15093== by 0x40DDA5E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15093== by 0x40DD8F1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15093== by 0x40DDFEB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15093== by 0x40D7F38: main (TestCryptStatistics.cpp:18) ==15093== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15093== ==15093== HEAP SUMMARY: ==15093== in use at exit: 126,423 bytes in 901 blocks ==15093== total heap usage: 1,799,933 allocs, 1,799,032 frees, 118,248,123 bytes allocated ==15093== ==15093== LEAK SUMMARY: ==15093== definitely lost: 0 bytes in 0 blocks ==15093== indirectly lost: 0 bytes in 0 blocks ==15093== possibly lost: 0 bytes in 0 blocks ==15093== still reachable: 11,949 bytes in 44 blocks ==15093== suppressed: 114,474 bytes in 857 blocks ==15093== Reachable blocks (those to which a pointer was found) are not shown. ==15093== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==15093== ==15093== For lists of detected and suppressed errors, rerun with: -s ==15093== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)