==14764== Memcheck, a memory error detector
==14764== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==14764== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==14764== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexBasedCellPopulationForCrypt -malloc_debug -malloc_dump -memory_info
==14764== Parent PID: 14623
==14764== 
==14764== 
==14764== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==14764== Open file descriptor 10: /dev/shm/open_mpi.0000
==14764==    at 0x14A683B6: __open_nocancel (open64_nocancel.c:39)
==14764==    by 0x149EC943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==14764==    by 0x1A12989E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14764==    by 0x1A129A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14764==    by 0x1A128C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14764==    by 0x1A128F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14764==    by 0x19FF8159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14764==    by 0x143030E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x1430849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x143092C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x1430018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x1433A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x6996446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14764==    by 0x1425C2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14764==    by 0x1425C347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14764==    by 0x401A1A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14764==    by 0x4015231: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14764==    by 0x4017A0E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14764==    by 0x40178A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14764==    by 0x4017F9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14764==    by 0x4013688: main (TestVertexBasedCellPopulationForCrypt.cpp:18)
==14764== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14764== Open file descriptor 9:
==14764==    at 0x14A7684B: eventfd (syscall-template.S:120)
==14764==    by 0x1A189188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14764==    by 0x1A187395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14764==    by 0x1A187704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14764==    by 0x1A1879F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14764==    by 0x1A0EE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14764==    by 0x1A0EE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14764==    by 0x19FF8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14764==    by 0x143030E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x1430849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x143092C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x1430018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x1433A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x6996446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14764==    by 0x1425C2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14764==    by 0x1425C347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14764==    by 0x401A1A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14764==    by 0x4015231: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14764==    by 0x4017A0E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14764==    by 0x40178A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14764==    by 0x4017F9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14764==    by 0x4013688: main (TestVertexBasedCellPopulationForCrypt.cpp:18)
==14764== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14764== Open file descriptor 8:
==14764==    at 0x14A6713B: pipe2 (syscall-template.S:120)
==14764==    by 0x1A188F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14764==    by 0x1A18B579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14764==    by 0x1A18B774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14764==    by 0x1A1878AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14764==    by 0x1A0EE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14764==    by 0x1A0EE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14764==    by 0x19FF8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14764==    by 0x143030E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x1430849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x143092C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x1430018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x1433A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x6996446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14764==    by 0x1425C2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14764==    by 0x1425C347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14764==    by 0x401A1A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14764==    by 0x4015231: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14764==    by 0x4017A0E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14764==    by 0x40178A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14764==    by 0x4017F9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14764==    by 0x4013688: main (TestVertexBasedCellPopulationForCrypt.cpp:18)
==14764== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14764== Open file descriptor 7:
==14764==    at 0x14A6713B: pipe2 (syscall-template.S:120)
==14764==    by 0x1A188F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14764==    by 0x1A18B579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14764==    by 0x1A18B774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14764==    by 0x1A1878AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14764==    by 0x1A0EE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14764==    by 0x1A0EE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14764==    by 0x19FF8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14764==    by 0x143030E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x1430849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x143092C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x1430018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x1433A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x6996446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14764==    by 0x1425C2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14764==    by 0x1425C347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14764==    by 0x401A1A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14764==    by 0x4015231: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14764==    by 0x4017A0E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14764==    by 0x40178A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14764==    by 0x4017F9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14764==    by 0x4013688: main (TestVertexBasedCellPopulationForCrypt.cpp:18)
==14764== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14764== Open file descriptor 6:
==14764==    at 0x14A7734B: epoll_create1 (syscall-template.S:120)
==14764==    by 0x1A18B6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14764==    by 0x1A1878AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14764==    by 0x1A0EE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14764==    by 0x1A0EE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14764==    by 0x19FF8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14764==    by 0x143030E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x1430849F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x143092C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x1430018F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x1433A627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14764==    by 0x6996446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14764==    by 0x1425C2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14764==    by 0x1425C347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14764==    by 0x401A1A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14764==    by 0x4015231: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14764==    by 0x4017A0E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14764==    by 0x40178A1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14764==    by 0x4017F9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14764==    by 0x4013688: main (TestVertexBasedCellPopulationForCrypt.cpp:18)
==14764== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14764== 
==14764== HEAP SUMMARY:
==14764==     in use at exit: 126,553 bytes in 903 blocks
==14764==   total heap usage: 34,250 allocs, 33,347 frees, 10,973,636 bytes allocated
==14764== 
==14764== LEAK SUMMARY:
==14764==    definitely lost: 0 bytes in 0 blocks
==14764==    indirectly lost: 0 bytes in 0 blocks
==14764==      possibly lost: 0 bytes in 0 blocks
==14764==    still reachable: 12,061 bytes in 46 blocks
==14764==         suppressed: 114,492 bytes in 857 blocks
==14764== Reachable blocks (those to which a pointer was found) are not shown.
==14764== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==14764== 
==14764== For lists of detected and suppressed errors, rerun with: -s
==14764== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)