==17592== Memcheck, a memory error detector
==17592== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==17592== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==17592== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info
==17592== Parent PID: 16769
==17592== 
==17592== 
==17592== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==17592== Open file descriptor 10: /dev/shm/open_mpi.0000
==17592==    at 0x116083B6: __open_nocancel (open64_nocancel.c:39)
==17592==    by 0x1158C943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==17592==    by 0x163DC89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17592==    by 0x163DCA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17592==    by 0x163DBC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17592==    by 0x163DBF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17592==    by 0x162AB159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17592==    by 0x11E0C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E1149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E122C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E0918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E43627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x12A6A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17592==    by 0xEF392F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17592==    by 0xEF39347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17592==    by 0x4022A54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17592==    by 0x401D9A1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17592==    by 0x40201EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17592==    by 0x4020012: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17592==    by 0x40207BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17592==    by 0x401B9D8: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==17592== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17592== Open file descriptor 9:
==17592==    at 0x1161684B: eventfd (syscall-template.S:120)
==17592==    by 0x1643C188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17592==    by 0x1643A395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17592==    by 0x1643A704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17592==    by 0x1643A9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17592==    by 0x163A10D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17592==    by 0x163A11E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17592==    by 0x162AB120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17592==    by 0x11E0C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E1149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E122C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E0918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E43627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x12A6A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17592==    by 0xEF392F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17592==    by 0xEF39347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17592==    by 0x4022A54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17592==    by 0x401D9A1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17592==    by 0x40201EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17592==    by 0x4020012: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17592==    by 0x40207BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17592==    by 0x401B9D8: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==17592== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17592== Open file descriptor 8:
==17592==    at 0x1160713B: pipe2 (syscall-template.S:120)
==17592==    by 0x1643BF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17592==    by 0x1643E579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17592==    by 0x1643E774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17592==    by 0x1643A8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17592==    by 0x163A10D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17592==    by 0x163A11E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17592==    by 0x162AB120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17592==    by 0x11E0C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E1149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E122C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E0918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E43627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x12A6A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17592==    by 0xEF392F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17592==    by 0xEF39347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17592==    by 0x4022A54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17592==    by 0x401D9A1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17592==    by 0x40201EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17592==    by 0x4020012: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17592==    by 0x40207BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17592==    by 0x401B9D8: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==17592== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17592== Open file descriptor 7:
==17592==    at 0x1160713B: pipe2 (syscall-template.S:120)
==17592==    by 0x1643BF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17592==    by 0x1643E579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17592==    by 0x1643E774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17592==    by 0x1643A8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17592==    by 0x163A10D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17592==    by 0x163A11E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17592==    by 0x162AB120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17592==    by 0x11E0C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E1149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E122C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E0918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E43627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x12A6A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17592==    by 0xEF392F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17592==    by 0xEF39347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17592==    by 0x4022A54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17592==    by 0x401D9A1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17592==    by 0x40201EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17592==    by 0x4020012: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17592==    by 0x40207BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17592==    by 0x401B9D8: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==17592== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17592== Open file descriptor 6:
==17592==    at 0x1161734B: epoll_create1 (syscall-template.S:120)
==17592==    by 0x1643E6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17592==    by 0x1643A8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17592==    by 0x163A10D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17592==    by 0x163A11E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17592==    by 0x162AB120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17592==    by 0x11E0C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E1149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E122C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E0918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x11E43627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17592==    by 0x12A6A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17592==    by 0xEF392F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17592==    by 0xEF39347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17592==    by 0x4022A54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17592==    by 0x401D9A1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17592==    by 0x40201EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17592==    by 0x4020012: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17592==    by 0x40207BB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17592==    by 0x401B9D8: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==17592== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17592== 
==17592== HEAP SUMMARY:
==17592==     in use at exit: 126,468 bytes in 902 blocks
==17592==   total heap usage: 1,125,966 allocs, 1,125,064 frees, 99,920,909 bytes allocated
==17592== 
==17592== LEAK SUMMARY:
==17592==    definitely lost: 0 bytes in 0 blocks
==17592==    indirectly lost: 0 bytes in 0 blocks
==17592==      possibly lost: 0 bytes in 0 blocks
==17592==    still reachable: 11,973 bytes in 45 blocks
==17592==         suppressed: 114,495 bytes in 857 blocks
==17592== Reachable blocks (those to which a pointer was found) are not shown.
==17592== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==17592== 
==17592== For lists of detected and suppressed errors, rerun with: -s
==17592== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)