==17066== Memcheck, a memory error detector ==17066== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==17066== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==17066== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestFileFinder -malloc_debug -malloc_dump -memory_info ==17066== Parent PID: 17013 ==17066== ==17066== ==17066== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==17066== Open file descriptor 10: /dev/shm/open_mpi.0000 ==17066== at 0x69B23B6: __open_nocancel (open64_nocancel.c:39) ==17066== by 0x6936943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==17066== by 0x9B3F89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17066== by 0x9B3FA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17066== by 0x9B3EC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17066== by 0x9B3EF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17066== by 0x9A0E159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17066== by 0x624B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x625049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x62512C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x624818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x6282627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x5229446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17066== by 0x495F2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17066== by 0x495F347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17066== by 0x401BAD5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==17066== by 0x4016C1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17066== by 0x4019852: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17066== by 0x4019680: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17066== by 0x4019DC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17066== by 0x4014FE2: main (TestFileFinder.cpp:19) ==17066== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17066== Open file descriptor 9: ==17066== at 0x69C084B: eventfd (syscall-template.S:120) ==17066== by 0x9B9F188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17066== by 0x9B9D395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17066== by 0x9B9D704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17066== by 0x9B9D9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17066== by 0x9B040D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17066== by 0x9B041E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17066== by 0x9A0E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17066== by 0x624B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x625049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x62512C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x624818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x6282627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x5229446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17066== by 0x495F2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17066== by 0x495F347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17066== by 0x401BAD5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==17066== by 0x4016C1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17066== by 0x4019852: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17066== by 0x4019680: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17066== by 0x4019DC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17066== by 0x4014FE2: main (TestFileFinder.cpp:19) ==17066== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17066== Open file descriptor 8: ==17066== at 0x69B113B: pipe2 (syscall-template.S:120) ==17066== by 0x9B9EF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17066== by 0x9BA1579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17066== by 0x9BA1774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17066== by 0x9B9D8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17066== by 0x9B040D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17066== by 0x9B041E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17066== by 0x9A0E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17066== by 0x624B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x625049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x62512C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x624818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x6282627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x5229446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17066== by 0x495F2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17066== by 0x495F347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17066== by 0x401BAD5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==17066== by 0x4016C1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17066== by 0x4019852: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17066== by 0x4019680: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17066== by 0x4019DC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17066== by 0x4014FE2: main (TestFileFinder.cpp:19) ==17066== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17066== Open file descriptor 7: ==17066== at 0x69B113B: pipe2 (syscall-template.S:120) ==17066== by 0x9B9EF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17066== by 0x9BA1579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17066== by 0x9BA1774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17066== by 0x9B9D8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17066== by 0x9B040D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17066== by 0x9B041E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17066== by 0x9A0E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17066== by 0x624B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x625049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x62512C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x624818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x6282627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x5229446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17066== by 0x495F2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17066== by 0x495F347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17066== by 0x401BAD5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==17066== by 0x4016C1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17066== by 0x4019852: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17066== by 0x4019680: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17066== by 0x4019DC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17066== by 0x4014FE2: main (TestFileFinder.cpp:19) ==17066== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17066== Open file descriptor 6: ==17066== at 0x69C134B: epoll_create1 (syscall-template.S:120) ==17066== by 0x9BA16FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17066== by 0x9B9D8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17066== by 0x9B040D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17066== by 0x9B041E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17066== by 0x9A0E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17066== by 0x624B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x625049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x62512C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x624818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x6282627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17066== by 0x5229446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17066== by 0x495F2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17066== by 0x495F347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17066== by 0x401BAD5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==17066== by 0x4016C1D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17066== by 0x4019852: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17066== by 0x4019680: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17066== by 0x4019DC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17066== by 0x4014FE2: main (TestFileFinder.cpp:19) ==17066== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17066== ==17066== HEAP SUMMARY: ==17066== in use at exit: 124,542 bytes in 897 blocks ==17066== total heap usage: 28,717 allocs, 27,820 frees, 12,001,366 bytes allocated ==17066== ==17066== LEAK SUMMARY: ==17066== definitely lost: 0 bytes in 0 blocks ==17066== indirectly lost: 0 bytes in 0 blocks ==17066== possibly lost: 0 bytes in 0 blocks ==17066== still reachable: 10,073 bytes in 40 blocks ==17066== suppressed: 114,469 bytes in 857 blocks ==17066== Reachable blocks (those to which a pointer was found) are not shown. ==17066== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==17066== ==17066== For lists of detected and suppressed errors, rerun with: -s ==17066== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)