==17107== Memcheck, a memory error detector ==17107== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==17107== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==17107== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestChasteBuildInfo -malloc_debug -malloc_dump -memory_info ==17107== Parent PID: 17106 ==17107== ==17107== ==17107== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==17107== Open file descriptor 10: /dev/shm/open_mpi.0000 ==17107== at 0x698D3B6: __open_nocancel (open64_nocancel.c:39) ==17107== by 0x6911943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==17107== by 0x9B1A89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17107== by 0x9B1AA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17107== by 0x9B19C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17107== by 0x9B19F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17107== by 0x99E9159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17107== by 0x62260E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x622B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x622C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x622318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x625D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x5204446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17107== by 0x493A2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17107== by 0x493A347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17107== by 0x400E641: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==17107== by 0x400A473: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17107== by 0x400C69A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17107== by 0x400C538: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17107== by 0x400CBE5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17107== by 0x4008C62: main (TestChasteBuildInfo.cpp:18) ==17107== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17107== Open file descriptor 9: ==17107== at 0x699B84B: eventfd (syscall-template.S:120) ==17107== by 0x9B7A188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17107== by 0x9B78395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17107== by 0x9B78704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17107== by 0x9B789F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17107== by 0x9ADF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17107== by 0x9ADF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17107== by 0x99E9120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17107== by 0x62260E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x622B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x622C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x622318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x625D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x5204446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17107== by 0x493A2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17107== by 0x493A347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17107== by 0x400E641: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==17107== by 0x400A473: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17107== by 0x400C69A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17107== by 0x400C538: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17107== by 0x400CBE5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17107== by 0x4008C62: main (TestChasteBuildInfo.cpp:18) ==17107== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17107== Open file descriptor 8: ==17107== at 0x698C13B: pipe2 (syscall-template.S:120) ==17107== by 0x9B79F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17107== by 0x9B7C579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17107== by 0x9B7C774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17107== by 0x9B788AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17107== by 0x9ADF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17107== by 0x9ADF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17107== by 0x99E9120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17107== by 0x62260E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x622B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x622C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x622318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x625D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x5204446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17107== by 0x493A2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17107== by 0x493A347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17107== by 0x400E641: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==17107== by 0x400A473: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17107== by 0x400C69A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17107== by 0x400C538: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17107== by 0x400CBE5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17107== by 0x4008C62: main (TestChasteBuildInfo.cpp:18) ==17107== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17107== Open file descriptor 7: ==17107== at 0x698C13B: pipe2 (syscall-template.S:120) ==17107== by 0x9B79F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17107== by 0x9B7C579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17107== by 0x9B7C774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17107== by 0x9B788AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17107== by 0x9ADF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17107== by 0x9ADF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17107== by 0x99E9120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17107== by 0x62260E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x622B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x622C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x622318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x625D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x5204446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17107== by 0x493A2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17107== by 0x493A347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17107== by 0x400E641: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==17107== by 0x400A473: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17107== by 0x400C69A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17107== by 0x400C538: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17107== by 0x400CBE5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17107== by 0x4008C62: main (TestChasteBuildInfo.cpp:18) ==17107== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17107== Open file descriptor 4: ==17107== at 0x699C34B: epoll_create1 (syscall-template.S:120) ==17107== by 0x9B7C6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17107== by 0x9B788AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17107== by 0x9ADF0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17107== by 0x9ADF1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17107== by 0x99E9120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17107== by 0x62260E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x622B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x622C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x622318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x625D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17107== by 0x5204446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17107== by 0x493A2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17107== by 0x493A347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17107== by 0x400E641: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==17107== by 0x400A473: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17107== by 0x400C69A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17107== by 0x400C538: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17107== by 0x400CBE5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17107== by 0x4008C62: main (TestChasteBuildInfo.cpp:18) ==17107== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17107== ==17107== HEAP SUMMARY: ==17107== in use at exit: 124,547 bytes in 897 blocks ==17107== total heap usage: 25,127 allocs, 24,230 frees, 10,101,090 bytes allocated ==17107== ==17107== LEAK SUMMARY: ==17107== definitely lost: 0 bytes in 0 blocks ==17107== indirectly lost: 0 bytes in 0 blocks ==17107== possibly lost: 0 bytes in 0 blocks ==17107== still reachable: 10,073 bytes in 40 blocks ==17107== suppressed: 114,474 bytes in 857 blocks ==17107== Reachable blocks (those to which a pointer was found) are not shown. ==17107== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==17107== ==17107== For lists of detected and suppressed errors, rerun with: -s ==17107== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)