==14738== Memcheck, a memory error detector
==14738== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==14738== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==14738== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info
==14738== Parent PID: 14735
==14738== 
==14738== 
==14738== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==14738== Open file descriptor 10: /dev/shm/open_mpi.0000
==14738==    at 0x132CE3B6: __open_nocancel (open64_nocancel.c:39)
==14738==    by 0x13252943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==14738==    by 0x1841389E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14738==    by 0x18413A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14738==    by 0x18412C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14738==    by 0x18412F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14738==    by 0x182E2159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14738==    by 0x12B690E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12B6E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12B6F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12B6618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12BA0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x6ADA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14738==    by 0x12AC42F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14738==    by 0x12AC4347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14738==    by 0x40B3673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14738==    by 0x40AA781: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14738==    by 0x40AE39E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14738==    by 0x40AE1C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14738==    by 0x40AE96B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14738==    by 0x40A67D8: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19)
==14738== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14738== Open file descriptor 9:
==14738==    at 0x132DC84B: eventfd (syscall-template.S:120)
==14738==    by 0x18475188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14738==    by 0x18473395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14738==    by 0x18473704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14738==    by 0x184739F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14738==    by 0x183D80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14738==    by 0x183D81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14738==    by 0x182E2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14738==    by 0x12B690E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12B6E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12B6F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12B6618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12BA0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x6ADA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14738==    by 0x12AC42F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14738==    by 0x12AC4347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14738==    by 0x40B3673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14738==    by 0x40AA781: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14738==    by 0x40AE39E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14738==    by 0x40AE1C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14738==    by 0x40AE96B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14738==    by 0x40A67D8: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19)
==14738== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14738== Open file descriptor 8:
==14738==    at 0x132CD13B: pipe2 (syscall-template.S:120)
==14738==    by 0x18474F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14738==    by 0x18477579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14738==    by 0x18477774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14738==    by 0x184738AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14738==    by 0x183D80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14738==    by 0x183D81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14738==    by 0x182E2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14738==    by 0x12B690E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12B6E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12B6F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12B6618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12BA0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x6ADA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14738==    by 0x12AC42F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14738==    by 0x12AC4347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14738==    by 0x40B3673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14738==    by 0x40AA781: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14738==    by 0x40AE39E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14738==    by 0x40AE1C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14738==    by 0x40AE96B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14738==    by 0x40A67D8: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19)
==14738== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14738== Open file descriptor 7:
==14738==    at 0x132CD13B: pipe2 (syscall-template.S:120)
==14738==    by 0x18474F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14738==    by 0x18477579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14738==    by 0x18477774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14738==    by 0x184738AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14738==    by 0x183D80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14738==    by 0x183D81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14738==    by 0x182E2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14738==    by 0x12B690E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12B6E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12B6F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12B6618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12BA0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x6ADA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14738==    by 0x12AC42F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14738==    by 0x12AC4347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14738==    by 0x40B3673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14738==    by 0x40AA781: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14738==    by 0x40AE39E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14738==    by 0x40AE1C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14738==    by 0x40AE96B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14738==    by 0x40A67D8: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19)
==14738== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14738== Open file descriptor 6:
==14738==    at 0x132DD34B: epoll_create1 (syscall-template.S:120)
==14738==    by 0x184776FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14738==    by 0x184738AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14738==    by 0x183D80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14738==    by 0x183D81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14738==    by 0x182E2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14738==    by 0x12B690E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12B6E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12B6F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12B6618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x12BA0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14738==    by 0x6ADA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14738==    by 0x12AC42F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14738==    by 0x12AC4347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14738==    by 0x40B3673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14738==    by 0x40AA781: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14738==    by 0x40AE39E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14738==    by 0x40AE1C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14738==    by 0x40AE96B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14738==    by 0x40A67D8: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19)
==14738== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14738== 
==14738== HEAP SUMMARY:
==14738==     in use at exit: 126,535 bytes in 903 blocks
==14738==   total heap usage: 842,406 allocs, 841,503 frees, 135,432,523 bytes allocated
==14738== 
==14738== LEAK SUMMARY:
==14738==    definitely lost: 0 bytes in 0 blocks
==14738==    indirectly lost: 0 bytes in 0 blocks
==14738==      possibly lost: 0 bytes in 0 blocks
==14738==    still reachable: 12,045 bytes in 46 blocks
==14738==         suppressed: 114,490 bytes in 857 blocks
==14738== Reachable blocks (those to which a pointer was found) are not shown.
==14738== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==14738== 
==14738== For lists of detected and suppressed errors, rerun with: -s
==14738== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)