==17437== Memcheck, a memory error detector
==17437== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==17437== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==17437== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestImmersedBoundary2dArrays -malloc_debug -malloc_dump -memory_info
==17437== Parent PID: 16929
==17437== 
==17437== 
==17437== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==17437== Open file descriptor 10: /dev/shm/open_mpi.0000
==17437==    at 0xA81D3B6: __open_nocancel (open64_nocancel.c:39)
==17437==    by 0xA7A1943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==17437==    by 0xF75D89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17437==    by 0xF75DA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17437==    by 0xF75CC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17437==    by 0xF75CF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17437==    by 0xF62C159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17437==    by 0x7D420E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D4749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D482C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D3F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D79627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x6D1E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17437==    by 0x64542F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17437==    by 0x6454347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17437==    by 0x40313C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==17437==    by 0x402C851: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17437==    by 0x402F23E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17437==    by 0x402F0D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17437==    by 0x402F7CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17437==    by 0x402ACA8: main (TestImmersedBoundary2dArrays.cpp:18)
==17437== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17437== Open file descriptor 9:
==17437==    at 0xA82B84B: eventfd (syscall-template.S:120)
==17437==    by 0xF7BD188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17437==    by 0xF7BB395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17437==    by 0xF7BB704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17437==    by 0xF7BB9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17437==    by 0xF7220D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17437==    by 0xF7221E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17437==    by 0xF62C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17437==    by 0x7D420E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D4749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D482C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D3F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D79627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x6D1E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17437==    by 0x64542F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17437==    by 0x6454347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17437==    by 0x40313C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==17437==    by 0x402C851: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17437==    by 0x402F23E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17437==    by 0x402F0D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17437==    by 0x402F7CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17437==    by 0x402ACA8: main (TestImmersedBoundary2dArrays.cpp:18)
==17437== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17437== Open file descriptor 8:
==17437==    at 0xA81C13B: pipe2 (syscall-template.S:120)
==17437==    by 0xF7BCF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17437==    by 0xF7BF579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17437==    by 0xF7BF774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17437==    by 0xF7BB8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17437==    by 0xF7220D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17437==    by 0xF7221E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17437==    by 0xF62C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17437==    by 0x7D420E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D4749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D482C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D3F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D79627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x6D1E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17437==    by 0x64542F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17437==    by 0x6454347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17437==    by 0x40313C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==17437==    by 0x402C851: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17437==    by 0x402F23E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17437==    by 0x402F0D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17437==    by 0x402F7CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17437==    by 0x402ACA8: main (TestImmersedBoundary2dArrays.cpp:18)
==17437== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17437== Open file descriptor 7:
==17437==    at 0xA81C13B: pipe2 (syscall-template.S:120)
==17437==    by 0xF7BCF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17437==    by 0xF7BF579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17437==    by 0xF7BF774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17437==    by 0xF7BB8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17437==    by 0xF7220D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17437==    by 0xF7221E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17437==    by 0xF62C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17437==    by 0x7D420E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D4749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D482C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D3F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D79627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x6D1E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17437==    by 0x64542F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17437==    by 0x6454347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17437==    by 0x40313C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==17437==    by 0x402C851: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17437==    by 0x402F23E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17437==    by 0x402F0D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17437==    by 0x402F7CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17437==    by 0x402ACA8: main (TestImmersedBoundary2dArrays.cpp:18)
==17437== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17437== Open file descriptor 6:
==17437==    at 0xA82C34B: epoll_create1 (syscall-template.S:120)
==17437==    by 0xF7BF6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17437==    by 0xF7BB8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17437==    by 0xF7220D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17437==    by 0xF7221E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17437==    by 0xF62C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17437==    by 0x7D420E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D4749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D482C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D3F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x7D79627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17437==    by 0x6D1E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17437==    by 0x64542F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17437==    by 0x6454347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17437==    by 0x40313C3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==17437==    by 0x402C851: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17437==    by 0x402F23E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17437==    by 0x402F0D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17437==    by 0x402F7CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17437==    by 0x402ACA8: main (TestImmersedBoundary2dArrays.cpp:18)
==17437== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17437== 
==17437== HEAP SUMMARY:
==17437==     in use at exit: 107,047 bytes in 635 blocks
==17437==   total heap usage: 29,273 allocs, 28,638 frees, 15,275,638 bytes allocated
==17437== 
==17437== LEAK SUMMARY:
==17437==    definitely lost: 0 bytes in 0 blocks
==17437==    indirectly lost: 0 bytes in 0 blocks
==17437==      possibly lost: 0 bytes in 0 blocks
==17437==    still reachable: 14,445 bytes in 45 blocks
==17437==         suppressed: 92,602 bytes in 590 blocks
==17437== Reachable blocks (those to which a pointer was found) are not shown.
==17437== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==17437== 
==17437== For lists of detected and suppressed errors, rerun with: -s
==17437== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)