==16855== Memcheck, a memory error detector ==16855== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==16855== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==16855== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestExecutableSupport -malloc_debug -malloc_dump -memory_info ==16855== Parent PID: 16814 ==16855== ==16855== ==16855== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==16855== Open file descriptor 10: /dev/shm/open_mpi.0000 ==16855== at 0x4D783B6: __open_nocancel (open64_nocancel.c:39) ==16855== by 0x4CFC943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==16855== by 0x719289E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16855== by 0x7192A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16855== by 0x7191C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16855== by 0x7191F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16855== by 0x7061159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16855== by 0x4EFF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4F0449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4F052C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4EFC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4F36627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x5B5B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16855== by 0x4910CFA: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) ==16855== by 0x491295E: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:349) ==16855== by 0x400F545: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==16855== by 0x400F934: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==16855== by 0x400A9FA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==16855== by 0x400D7E6: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==16855== by 0x400D6B7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==16855== by 0x400D549: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==16855== by 0x400D3AE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16855== by 0x400DA5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16855== by 0x40099B2: main (TestExecutableSupport.cpp:18) ==16855== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16855== Open file descriptor 9: ==16855== at 0x4D8684B: eventfd (syscall-template.S:120) ==16855== by 0x71F2188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16855== by 0x71F0395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16855== by 0x71F0704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16855== by 0x71F09F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16855== by 0x71570D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16855== by 0x71571E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16855== by 0x7061120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16855== by 0x4EFF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4F0449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4F052C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4EFC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4F36627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x5B5B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16855== by 0x4910CFA: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) ==16855== by 0x491295E: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:349) ==16855== by 0x400F545: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==16855== by 0x400F934: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==16855== by 0x400A9FA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==16855== by 0x400D7E6: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==16855== by 0x400D6B7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==16855== by 0x400D549: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==16855== by 0x400D3AE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16855== by 0x400DA5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16855== by 0x40099B2: main (TestExecutableSupport.cpp:18) ==16855== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16855== Open file descriptor 8: ==16855== at 0x4D7713B: pipe2 (syscall-template.S:120) ==16855== by 0x71F1F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16855== by 0x71F4579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16855== by 0x71F4774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16855== by 0x71F08AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16855== by 0x71570D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16855== by 0x71571E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16855== by 0x7061120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16855== by 0x4EFF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4F0449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4F052C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4EFC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4F36627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x5B5B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16855== by 0x4910CFA: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) ==16855== by 0x491295E: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:349) ==16855== by 0x400F545: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==16855== by 0x400F934: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==16855== by 0x400A9FA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==16855== by 0x400D7E6: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==16855== by 0x400D6B7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==16855== by 0x400D549: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==16855== by 0x400D3AE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16855== by 0x400DA5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16855== by 0x40099B2: main (TestExecutableSupport.cpp:18) ==16855== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16855== Open file descriptor 7: ==16855== at 0x4D7713B: pipe2 (syscall-template.S:120) ==16855== by 0x71F1F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16855== by 0x71F4579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16855== by 0x71F4774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16855== by 0x71F08AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16855== by 0x71570D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16855== by 0x71571E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16855== by 0x7061120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16855== by 0x4EFF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4F0449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4F052C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4EFC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4F36627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x5B5B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16855== by 0x4910CFA: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) ==16855== by 0x491295E: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:349) ==16855== by 0x400F545: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==16855== by 0x400F934: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==16855== by 0x400A9FA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==16855== by 0x400D7E6: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==16855== by 0x400D6B7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==16855== by 0x400D549: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==16855== by 0x400D3AE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16855== by 0x400DA5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16855== by 0x40099B2: main (TestExecutableSupport.cpp:18) ==16855== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16855== Open file descriptor 5: ==16855== at 0x4D8734B: epoll_create1 (syscall-template.S:120) ==16855== by 0x71F46FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16855== by 0x71F08AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16855== by 0x71570D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16855== by 0x71571E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16855== by 0x7061120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16855== by 0x4EFF0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4F0449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4F052C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4EFC18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x4F36627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16855== by 0x5B5B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16855== by 0x4910CFA: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:115) ==16855== by 0x491295E: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:349) ==16855== by 0x400F545: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==16855== by 0x400F934: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==16855== by 0x400A9FA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==16855== by 0x400D7E6: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==16855== by 0x400D6B7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==16855== by 0x400D549: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==16855== by 0x400D3AE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16855== by 0x400DA5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16855== by 0x40099B2: main (TestExecutableSupport.cpp:18) ==16855== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16855== ==16855== HEAP SUMMARY: ==16855== in use at exit: 102,690 bytes in 632 blocks ==16855== total heap usage: 24,799 allocs, 24,167 frees, 8,216,122 bytes allocated ==16855== ==16855== LEAK SUMMARY: ==16855== definitely lost: 0 bytes in 0 blocks ==16855== indirectly lost: 0 bytes in 0 blocks ==16855== possibly lost: 0 bytes in 0 blocks ==16855== still reachable: 10,073 bytes in 40 blocks ==16855== suppressed: 92,617 bytes in 592 blocks ==16855== Reachable blocks (those to which a pointer was found) are not shown. ==16855== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==16855== ==16855== For lists of detected and suppressed errors, rerun with: -s ==16855== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)