==17660== Memcheck, a memory error detector ==17660== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==17660== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==17660== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestGaussianQuadratureRule -malloc_debug -malloc_dump -memory_info ==17660== Parent PID: 16814 ==17660== ==17660== ==17660== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==17660== Open file descriptor 10: /dev/shm/open_mpi.0000 ==17660== at 0x6CB73B6: __open_nocancel (open64_nocancel.c:39) ==17660== by 0x6C3B943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==17660== by 0xD59289E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17660== by 0xD592A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17660== by 0xD591C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17660== by 0xD591F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17660== by 0xD461159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17660== by 0x6F2B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F3049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F312C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F2818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F62627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x7F14446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17660== by 0x67982F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17660== by 0x6798347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17660== by 0x40197C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17660== by 0x4014B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17660== by 0x40177C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17660== by 0x40175F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17660== by 0x4017D35: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17660== by 0x4012F52: main (TestGaussianQuadratureRule.cpp:19) ==17660== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17660== Open file descriptor 9: ==17660== at 0x6CC584B: eventfd (syscall-template.S:120) ==17660== by 0xD5F4188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17660== by 0xD5F2395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17660== by 0xD5F2704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17660== by 0xD5F29F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17660== by 0xD5570D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17660== by 0xD5571E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17660== by 0xD461120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17660== by 0x6F2B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F3049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F312C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F2818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F62627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x7F14446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17660== by 0x67982F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17660== by 0x6798347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17660== by 0x40197C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17660== by 0x4014B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17660== by 0x40177C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17660== by 0x40175F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17660== by 0x4017D35: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17660== by 0x4012F52: main (TestGaussianQuadratureRule.cpp:19) ==17660== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17660== Open file descriptor 8: ==17660== at 0x6CB613B: pipe2 (syscall-template.S:120) ==17660== by 0xD5F3F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17660== by 0xD5F6579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17660== by 0xD5F6774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17660== by 0xD5F28AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17660== by 0xD5570D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17660== by 0xD5571E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17660== by 0xD461120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17660== by 0x6F2B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F3049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F312C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F2818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F62627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x7F14446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17660== by 0x67982F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17660== by 0x6798347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17660== by 0x40197C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17660== by 0x4014B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17660== by 0x40177C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17660== by 0x40175F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17660== by 0x4017D35: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17660== by 0x4012F52: main (TestGaussianQuadratureRule.cpp:19) ==17660== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17660== Open file descriptor 7: ==17660== at 0x6CB613B: pipe2 (syscall-template.S:120) ==17660== by 0xD5F3F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17660== by 0xD5F6579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17660== by 0xD5F6774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17660== by 0xD5F28AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17660== by 0xD5570D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17660== by 0xD5571E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17660== by 0xD461120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17660== by 0x6F2B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F3049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F312C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F2818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F62627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x7F14446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17660== by 0x67982F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17660== by 0x6798347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17660== by 0x40197C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17660== by 0x4014B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17660== by 0x40177C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17660== by 0x40175F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17660== by 0x4017D35: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17660== by 0x4012F52: main (TestGaussianQuadratureRule.cpp:19) ==17660== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17660== Open file descriptor 6: ==17660== at 0x6CC634B: epoll_create1 (syscall-template.S:120) ==17660== by 0xD5F66FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17660== by 0xD5F28AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17660== by 0xD5570D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17660== by 0xD5571E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17660== by 0xD461120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17660== by 0x6F2B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F3049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F312C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F2818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x6F62627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17660== by 0x7F14446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17660== by 0x67982F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17660== by 0x6798347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17660== by 0x40197C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17660== by 0x4014B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17660== by 0x40177C2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17660== by 0x40175F0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17660== by 0x4017D35: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17660== by 0x4012F52: main (TestGaussianQuadratureRule.cpp:19) ==17660== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17660== ==17660== HEAP SUMMARY: ==17660== in use at exit: 104,531 bytes in 636 blocks ==17660== total heap usage: 27,048 allocs, 26,412 frees, 8,405,420 bytes allocated ==17660== ==17660== LEAK SUMMARY: ==17660== definitely lost: 0 bytes in 0 blocks ==17660== indirectly lost: 0 bytes in 0 blocks ==17660== possibly lost: 0 bytes in 0 blocks ==17660== still reachable: 11,909 bytes in 44 blocks ==17660== suppressed: 92,622 bytes in 592 blocks ==17660== Reachable blocks (those to which a pointer was found) are not shown. ==17660== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==17660== ==17660== For lists of detected and suppressed errors, rerun with: -s ==17660== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)