==17155== Memcheck, a memory error detector ==17155== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==17155== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==17155== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscEvents -malloc_debug -malloc_dump -memory_info ==17155== Parent PID: 17032 ==17155== ==17155== ==17155== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==17155== Open file descriptor 10: /dev/shm/open_mpi.0000 ==17155== at 0x659A3B6: __open_nocancel (open64_nocancel.c:39) ==17155== by 0x651E943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==17155== by 0x9B1989E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17155== by 0x9B19A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17155== by 0x9B18C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17155== by 0x9B18F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17155== by 0x99E8159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17155== by 0x67210E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x672649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x67272C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x671E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x6758627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x5203446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17155== by 0x49392F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17155== by 0x4939347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17155== by 0x400D9E2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17155== by 0x4009583: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17155== by 0x400B78A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17155== by 0x400B628: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17155== by 0x400BCD5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17155== by 0x4007D72: main (TestPetscEvents.cpp:18) ==17155== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17155== Open file descriptor 9: ==17155== at 0x65A884B: eventfd (syscall-template.S:120) ==17155== by 0x9B79188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17155== by 0x9B77395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17155== by 0x9B77704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17155== by 0x9B779F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17155== by 0x9ADE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17155== by 0x9ADE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17155== by 0x99E8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17155== by 0x67210E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x672649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x67272C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x671E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x6758627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x5203446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17155== by 0x49392F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17155== by 0x4939347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17155== by 0x400D9E2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17155== by 0x4009583: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17155== by 0x400B78A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17155== by 0x400B628: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17155== by 0x400BCD5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17155== by 0x4007D72: main (TestPetscEvents.cpp:18) ==17155== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17155== Open file descriptor 8: ==17155== at 0x659913B: pipe2 (syscall-template.S:120) ==17155== by 0x9B78F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17155== by 0x9B7B579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17155== by 0x9B7B774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17155== by 0x9B778AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17155== by 0x9ADE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17155== by 0x9ADE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17155== by 0x99E8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17155== by 0x67210E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x672649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x67272C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x671E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x6758627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x5203446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17155== by 0x49392F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17155== by 0x4939347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17155== by 0x400D9E2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17155== by 0x4009583: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17155== by 0x400B78A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17155== by 0x400B628: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17155== by 0x400BCD5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17155== by 0x4007D72: main (TestPetscEvents.cpp:18) ==17155== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17155== Open file descriptor 7: ==17155== at 0x659913B: pipe2 (syscall-template.S:120) ==17155== by 0x9B78F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17155== by 0x9B7B579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17155== by 0x9B7B774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17155== by 0x9B778AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17155== by 0x9ADE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17155== by 0x9ADE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17155== by 0x99E8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17155== by 0x67210E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x672649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x67272C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x671E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x6758627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x5203446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17155== by 0x49392F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17155== by 0x4939347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17155== by 0x400D9E2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17155== by 0x4009583: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17155== by 0x400B78A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17155== by 0x400B628: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17155== by 0x400BCD5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17155== by 0x4007D72: main (TestPetscEvents.cpp:18) ==17155== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17155== Open file descriptor 6: ==17155== at 0x65A934B: epoll_create1 (syscall-template.S:120) ==17155== by 0x9B7B6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17155== by 0x9B778AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17155== by 0x9ADE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17155== by 0x9ADE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17155== by 0x99E8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17155== by 0x67210E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x672649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x67272C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x671E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x6758627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17155== by 0x5203446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17155== by 0x49392F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17155== by 0x4939347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17155== by 0x400D9E2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17155== by 0x4009583: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17155== by 0x400B78A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17155== by 0x400B628: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17155== by 0x400BCD5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17155== by 0x4007D72: main (TestPetscEvents.cpp:18) ==17155== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17155== ==17155== HEAP SUMMARY: ==17155== in use at exit: 124,543 bytes in 897 blocks ==17155== total heap usage: 25,116 allocs, 24,219 frees, 10,095,320 bytes allocated ==17155== ==17155== LEAK SUMMARY: ==17155== definitely lost: 0 bytes in 0 blocks ==17155== indirectly lost: 0 bytes in 0 blocks ==17155== possibly lost: 0 bytes in 0 blocks ==17155== still reachable: 10,073 bytes in 40 blocks ==17155== suppressed: 114,470 bytes in 857 blocks ==17155== Reachable blocks (those to which a pointer was found) are not shown. ==17155== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==17155== ==17155== For lists of detected and suppressed errors, rerun with: -s ==17155== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)