==17921== Memcheck, a memory error detector ==17921== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==17921== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==17921== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/TestQuadraturePointsGroup -malloc_debug -malloc_dump -memory_info ==17921== Parent PID: 17032 ==17921== ==17921== ==17921== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==17921== Open file descriptor 10: /dev/shm/open_mpi.0000 ==17921== at 0x8E6A3B6: __open_nocancel (open64_nocancel.c:39) ==17921== by 0x8DEE943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==17921== by 0xD63689E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17921== by 0xD636A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17921== by 0xD635C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17921== by 0xD635F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17921== by 0xD505159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17921== by 0x90DE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x90E349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x90E42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x90DB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x9115627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0xA0C9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17921== by 0x679B2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17921== by 0x679B347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17921== by 0x401CE24: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17921== by 0x4017E01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17921== by 0x401A86E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17921== by 0x401A692: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17921== by 0x401AE3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17921== by 0x4015E38: main (TestQuadraturePointsGroup.cpp:19) ==17921== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17921== Open file descriptor 9: ==17921== at 0x8E7884B: eventfd (syscall-template.S:120) ==17921== by 0xD696188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17921== by 0xD694395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17921== by 0xD694704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17921== by 0xD6949F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17921== by 0xD5FB0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17921== by 0xD5FB1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17921== by 0xD505120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17921== by 0x90DE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x90E349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x90E42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x90DB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x9115627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0xA0C9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17921== by 0x679B2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17921== by 0x679B347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17921== by 0x401CE24: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17921== by 0x4017E01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17921== by 0x401A86E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17921== by 0x401A692: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17921== by 0x401AE3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17921== by 0x4015E38: main (TestQuadraturePointsGroup.cpp:19) ==17921== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17921== Open file descriptor 8: ==17921== at 0x8E6913B: pipe2 (syscall-template.S:120) ==17921== by 0xD695F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17921== by 0xD698579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17921== by 0xD698774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17921== by 0xD6948AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17921== by 0xD5FB0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17921== by 0xD5FB1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17921== by 0xD505120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17921== by 0x90DE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x90E349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x90E42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x90DB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x9115627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0xA0C9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17921== by 0x679B2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17921== by 0x679B347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17921== by 0x401CE24: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17921== by 0x4017E01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17921== by 0x401A86E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17921== by 0x401A692: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17921== by 0x401AE3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17921== by 0x4015E38: main (TestQuadraturePointsGroup.cpp:19) ==17921== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17921== Open file descriptor 7: ==17921== at 0x8E6913B: pipe2 (syscall-template.S:120) ==17921== by 0xD695F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17921== by 0xD698579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17921== by 0xD698774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17921== by 0xD6948AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17921== by 0xD5FB0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17921== by 0xD5FB1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17921== by 0xD505120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17921== by 0x90DE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x90E349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x90E42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x90DB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x9115627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0xA0C9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17921== by 0x679B2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17921== by 0x679B347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17921== by 0x401CE24: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17921== by 0x4017E01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17921== by 0x401A86E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17921== by 0x401A692: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17921== by 0x401AE3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17921== by 0x4015E38: main (TestQuadraturePointsGroup.cpp:19) ==17921== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17921== Open file descriptor 6: ==17921== at 0x8E7934B: epoll_create1 (syscall-template.S:120) ==17921== by 0xD6986FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17921== by 0xD6948AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17921== by 0xD5FB0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17921== by 0xD5FB1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17921== by 0xD505120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17921== by 0x90DE0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x90E349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x90E42C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x90DB18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0x9115627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17921== by 0xA0C9446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17921== by 0x679B2F9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17921== by 0x679B347: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17921== by 0x401CE24: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17921== by 0x4017E01: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17921== by 0x401A86E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17921== by 0x401A692: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17921== by 0x401AE3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17921== by 0x4015E38: main (TestQuadraturePointsGroup.cpp:19) ==17921== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17921== ==17921== HEAP SUMMARY: ==17921== in use at exit: 126,389 bytes in 901 blocks ==17921== total heap usage: 28,437 allocs, 27,536 frees, 10,855,106 bytes allocated ==17921== ==17921== LEAK SUMMARY: ==17921== definitely lost: 0 bytes in 0 blocks ==17921== indirectly lost: 0 bytes in 0 blocks ==17921== possibly lost: 0 bytes in 0 blocks ==17921== still reachable: 11,909 bytes in 44 blocks ==17921== suppressed: 114,480 bytes in 857 blocks ==17921== Reachable blocks (those to which a pointer was found) are not shown. ==17921== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==17921== ==17921== For lists of detected and suppressed errors, rerun with: -s ==17921== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)