==17031== Memcheck, a memory error detector ==17031== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==17031== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==17031== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestChebyshevIteration -malloc_debug -malloc_dump -memory_info ==17031== Parent PID: 16837 ==17031== ==17031== ==17031== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==17031== Open file descriptor 10: /dev/shm/open_mpi.0000 ==17031== at 0x66243B6: __open_nocancel (open64_nocancel.c:39) ==17031== by 0x65A8943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==17031== by 0xA1A789E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17031== by 0xA1A7A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17031== by 0xA1A6C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17031== by 0xA1A6F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17031== by 0xA076159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17031== by 0x8D2E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D3349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D342C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D2B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D65627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x51B5446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17031== by 0x61E727F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17031== by 0x61E72CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17031== by 0x40135CC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17031== by 0x400E7FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17031== by 0x4011338: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17031== by 0x4011166: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17031== by 0x40118AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17031== by 0x400CBC2: main (TestChebyshevIteration.cpp:19) ==17031== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17031== Open file descriptor 9: ==17031== at 0x663284B: eventfd (syscall-template.S:120) ==17031== by 0xA647188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17031== by 0xA645395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17031== by 0xA645704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17031== by 0xA6459F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17031== by 0xA16C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17031== by 0xA16C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17031== by 0xA076120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17031== by 0x8D2E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D3349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D342C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D2B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D65627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x51B5446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17031== by 0x61E727F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17031== by 0x61E72CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17031== by 0x40135CC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17031== by 0x400E7FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17031== by 0x4011338: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17031== by 0x4011166: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17031== by 0x40118AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17031== by 0x400CBC2: main (TestChebyshevIteration.cpp:19) ==17031== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17031== Open file descriptor 8: ==17031== at 0x662313B: pipe2 (syscall-template.S:120) ==17031== by 0xA646F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17031== by 0xA649579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17031== by 0xA649774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17031== by 0xA6458AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17031== by 0xA16C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17031== by 0xA16C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17031== by 0xA076120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17031== by 0x8D2E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D3349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D342C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D2B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D65627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x51B5446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17031== by 0x61E727F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17031== by 0x61E72CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17031== by 0x40135CC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17031== by 0x400E7FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17031== by 0x4011338: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17031== by 0x4011166: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17031== by 0x40118AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17031== by 0x400CBC2: main (TestChebyshevIteration.cpp:19) ==17031== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17031== Open file descriptor 7: ==17031== at 0x662313B: pipe2 (syscall-template.S:120) ==17031== by 0xA646F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17031== by 0xA649579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17031== by 0xA649774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17031== by 0xA6458AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17031== by 0xA16C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17031== by 0xA16C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17031== by 0xA076120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17031== by 0x8D2E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D3349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D342C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D2B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D65627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x51B5446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17031== by 0x61E727F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17031== by 0x61E72CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17031== by 0x40135CC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17031== by 0x400E7FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17031== by 0x4011338: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17031== by 0x4011166: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17031== by 0x40118AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17031== by 0x400CBC2: main (TestChebyshevIteration.cpp:19) ==17031== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17031== Open file descriptor 6: ==17031== at 0x663334B: epoll_create1 (syscall-template.S:120) ==17031== by 0xA6496FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17031== by 0xA6458AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17031== by 0xA16C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17031== by 0xA16C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17031== by 0xA076120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17031== by 0x8D2E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D3349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D342C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D2B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x8D65627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17031== by 0x51B5446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17031== by 0x61E727F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17031== by 0x61E72CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17031== by 0x40135CC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17031== by 0x400E7FD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17031== by 0x4011338: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17031== by 0x4011166: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17031== by 0x40118AB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17031== by 0x400CBC2: main (TestChebyshevIteration.cpp:19) ==17031== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17031== ==17031== HEAP SUMMARY: ==17031== in use at exit: 127,032 bytes in 929 blocks ==17031== total heap usage: 28,959 allocs, 28,030 frees, 26,698,768 bytes allocated ==17031== ==17031== LEAK SUMMARY: ==17031== definitely lost: 0 bytes in 0 blocks ==17031== indirectly lost: 0 bytes in 0 blocks ==17031== possibly lost: 0 bytes in 0 blocks ==17031== still reachable: 10,081 bytes in 40 blocks ==17031== suppressed: 116,951 bytes in 889 blocks ==17031== Reachable blocks (those to which a pointer was found) are not shown. ==17031== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==17031== ==17031== For lists of detected and suppressed errors, rerun with: -s ==17031== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)