==17712== Memcheck, a memory error detector ==17712== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==17712== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==17712== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMaterialLaws -malloc_debug -malloc_dump -memory_info ==17712== Parent PID: 16837 ==17712== ==17712== ==17712== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==17712== Open file descriptor 10: /dev/shm/open_mpi.0000 ==17712== at 0x50003B6: __open_nocancel (open64_nocancel.c:39) ==17712== by 0x4F84943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==17712== by 0xFD4089E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17712== by 0xFD40A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17712== by 0xFD3FC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17712== by 0xFD3FF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17712== by 0xFC0F159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17712== by 0xAB0D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB1249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB132C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB0A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB44627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0x787A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17712== by 0x4AE127F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17712== by 0x4AE12CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17712== by 0x403007C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17712== by 0x402AD3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17712== by 0x402DB74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17712== by 0x402D9A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17712== by 0x402E0E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17712== by 0x4029102: main (TestMaterialLaws.cpp:19) ==17712== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17712== Open file descriptor 9: ==17712== at 0x500E84B: eventfd (syscall-template.S:120) ==17712== by 0xFDA0188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17712== by 0xFD9E395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17712== by 0xFD9E704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17712== by 0xFD9E9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17712== by 0xFD050D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17712== by 0xFD051E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17712== by 0xFC0F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17712== by 0xAB0D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB1249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB132C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB0A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB44627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0x787A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17712== by 0x4AE127F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17712== by 0x4AE12CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17712== by 0x403007C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17712== by 0x402AD3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17712== by 0x402DB74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17712== by 0x402D9A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17712== by 0x402E0E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17712== by 0x4029102: main (TestMaterialLaws.cpp:19) ==17712== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17712== Open file descriptor 8: ==17712== at 0x4FFF13B: pipe2 (syscall-template.S:120) ==17712== by 0xFD9FF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17712== by 0xFDA2579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17712== by 0xFDA2774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17712== by 0xFD9E8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17712== by 0xFD050D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17712== by 0xFD051E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17712== by 0xFC0F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17712== by 0xAB0D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB1249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB132C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB0A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB44627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0x787A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17712== by 0x4AE127F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17712== by 0x4AE12CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17712== by 0x403007C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17712== by 0x402AD3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17712== by 0x402DB74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17712== by 0x402D9A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17712== by 0x402E0E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17712== by 0x4029102: main (TestMaterialLaws.cpp:19) ==17712== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17712== Open file descriptor 7: ==17712== at 0x4FFF13B: pipe2 (syscall-template.S:120) ==17712== by 0xFD9FF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17712== by 0xFDA2579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17712== by 0xFDA2774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17712== by 0xFD9E8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17712== by 0xFD050D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17712== by 0xFD051E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17712== by 0xFC0F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17712== by 0xAB0D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB1249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB132C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB0A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB44627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0x787A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17712== by 0x4AE127F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17712== by 0x4AE12CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17712== by 0x403007C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17712== by 0x402AD3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17712== by 0x402DB74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17712== by 0x402D9A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17712== by 0x402E0E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17712== by 0x4029102: main (TestMaterialLaws.cpp:19) ==17712== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17712== Open file descriptor 5: ==17712== at 0x500F34B: epoll_create1 (syscall-template.S:120) ==17712== by 0xFDA26FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17712== by 0xFD9E8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17712== by 0xFD050D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17712== by 0xFD051E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17712== by 0xFC0F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17712== by 0xAB0D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB1249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB132C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB0A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0xAB44627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17712== by 0x787A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17712== by 0x4AE127F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17712== by 0x4AE12CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17712== by 0x403007C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17712== by 0x402AD3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17712== by 0x402DB74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17712== by 0x402D9A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17712== by 0x402E0E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17712== by 0x4029102: main (TestMaterialLaws.cpp:19) ==17712== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17712== ==17712== HEAP SUMMARY: ==17712== in use at exit: 128,862 bytes in 933 blocks ==17712== total heap usage: 27,698 allocs, 26,765 frees, 10,461,343 bytes allocated ==17712== ==17712== LEAK SUMMARY: ==17712== definitely lost: 0 bytes in 0 blocks ==17712== indirectly lost: 0 bytes in 0 blocks ==17712== possibly lost: 0 bytes in 0 blocks ==17712== still reachable: 11,917 bytes in 44 blocks ==17712== suppressed: 116,945 bytes in 889 blocks ==17712== Reachable blocks (those to which a pointer was found) are not shown. ==17712== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==17712== ==17712== For lists of detected and suppressed errors, rerun with: -s ==17712== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)