==17950== Memcheck, a memory error detector
==17950== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==17950== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==17950== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestAbstractContinuumMechanicsAssembler -malloc_debug -malloc_dump -memory_info
==17950== Parent PID: 17059
==17950== 
==17950== 
==17950== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==17950== Open file descriptor 10: /dev/shm/open_mpi.0000
==17950==    at 0xA8703B6: __open_nocancel (open64_nocancel.c:39)
==17950==    by 0xA7F4943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==17950==    by 0x1022989E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17950==    by 0x10229A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17950==    by 0x10228C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17950==    by 0x10228F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17950==    by 0x100F8159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17950==    by 0xCE510E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE5649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE572C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE4E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE88627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0x51BF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17950==    by 0xA37427F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17950==    by 0xA3742CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17950==    by 0x4064F24: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17950==    by 0x405EE31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17950==    by 0x40627DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17950==    by 0x4062602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17950==    by 0x4062DAB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17950==    by 0x405CE68: main (TestAbstractContinuumMechanicsAssembler.cpp:19)
==17950== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17950== Open file descriptor 9:
==17950==    at 0xA87E84B: eventfd (syscall-template.S:120)
==17950==    by 0x106C9188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17950==    by 0x106C7395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17950==    by 0x106C7704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17950==    by 0x106C79F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17950==    by 0x101EE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17950==    by 0x101EE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17950==    by 0x100F8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17950==    by 0xCE510E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE5649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE572C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE4E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE88627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0x51BF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17950==    by 0xA37427F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17950==    by 0xA3742CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17950==    by 0x4064F24: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17950==    by 0x405EE31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17950==    by 0x40627DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17950==    by 0x4062602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17950==    by 0x4062DAB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17950==    by 0x405CE68: main (TestAbstractContinuumMechanicsAssembler.cpp:19)
==17950== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17950== Open file descriptor 8:
==17950==    at 0xA86F13B: pipe2 (syscall-template.S:120)
==17950==    by 0x106C8F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17950==    by 0x106CB579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17950==    by 0x106CB774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17950==    by 0x106C78AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17950==    by 0x101EE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17950==    by 0x101EE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17950==    by 0x100F8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17950==    by 0xCE510E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE5649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE572C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE4E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE88627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0x51BF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17950==    by 0xA37427F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17950==    by 0xA3742CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17950==    by 0x4064F24: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17950==    by 0x405EE31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17950==    by 0x40627DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17950==    by 0x4062602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17950==    by 0x4062DAB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17950==    by 0x405CE68: main (TestAbstractContinuumMechanicsAssembler.cpp:19)
==17950== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17950== Open file descriptor 7:
==17950==    at 0xA86F13B: pipe2 (syscall-template.S:120)
==17950==    by 0x106C8F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17950==    by 0x106CB579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17950==    by 0x106CB774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17950==    by 0x106C78AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17950==    by 0x101EE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17950==    by 0x101EE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17950==    by 0x100F8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17950==    by 0xCE510E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE5649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE572C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE4E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE88627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0x51BF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17950==    by 0xA37427F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17950==    by 0xA3742CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17950==    by 0x4064F24: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17950==    by 0x405EE31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17950==    by 0x40627DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17950==    by 0x4062602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17950==    by 0x4062DAB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17950==    by 0x405CE68: main (TestAbstractContinuumMechanicsAssembler.cpp:19)
==17950== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17950== Open file descriptor 6:
==17950==    at 0xA87F34B: epoll_create1 (syscall-template.S:120)
==17950==    by 0x106CB6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17950==    by 0x106C78AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17950==    by 0x101EE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17950==    by 0x101EE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17950==    by 0x100F8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17950==    by 0xCE510E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE5649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE572C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE4E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0xCE88627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17950==    by 0x51BF446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17950==    by 0xA37427F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17950==    by 0xA3742CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17950==    by 0x4064F24: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17950==    by 0x405EE31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17950==    by 0x40627DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17950==    by 0x4062602: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17950==    by 0x4062DAB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17950==    by 0x405CE68: main (TestAbstractContinuumMechanicsAssembler.cpp:19)
==17950== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17950== 
==17950== HEAP SUMMARY:
==17950==     in use at exit: 126,402 bytes in 901 blocks
==17950==   total heap usage: 30,507 allocs, 29,606 frees, 11,917,949 bytes allocated
==17950== 
==17950== LEAK SUMMARY:
==17950==    definitely lost: 0 bytes in 0 blocks
==17950==    indirectly lost: 0 bytes in 0 blocks
==17950==      possibly lost: 0 bytes in 0 blocks
==17950==    still reachable: 11,909 bytes in 44 blocks
==17950==         suppressed: 114,493 bytes in 857 blocks
==17950== Reachable blocks (those to which a pointer was found) are not shown.
==17950== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==17950== 
==17950== For lists of detected and suppressed errors, rerun with: -s
==17950== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)