==17060== Memcheck, a memory error detector ==17060== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==17060== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==17060== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestChasteBuildInfo -malloc_debug -malloc_dump -memory_info ==17060== Parent PID: 17059 ==17060== ==17060== ==17060== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==17060== Open file descriptor 10: /dev/shm/open_mpi.0000 ==17060== at 0x698E3B6: __open_nocancel (open64_nocancel.c:39) ==17060== by 0x6912943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==17060== by 0x9B1B89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17060== by 0x9B1BA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17060== by 0x9B1AC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17060== by 0x9B1AF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17060== by 0x99EA159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17060== by 0x62270E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x622C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x622D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x622418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x625E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x5205446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17060== by 0x493B27F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17060== by 0x493B2CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17060== by 0x400E92F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==17060== by 0x400A733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17060== by 0x400C988: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17060== by 0x400C826: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17060== by 0x400CED3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17060== by 0x4008F22: main (TestChasteBuildInfo.cpp:18) ==17060== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17060== Open file descriptor 9: ==17060== at 0x699C84B: eventfd (syscall-template.S:120) ==17060== by 0x9B7B188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17060== by 0x9B79395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17060== by 0x9B79704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17060== by 0x9B799F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17060== by 0x9AE00D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17060== by 0x9AE01E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17060== by 0x99EA120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17060== by 0x62270E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x622C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x622D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x622418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x625E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x5205446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17060== by 0x493B27F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17060== by 0x493B2CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17060== by 0x400E92F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==17060== by 0x400A733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17060== by 0x400C988: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17060== by 0x400C826: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17060== by 0x400CED3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17060== by 0x4008F22: main (TestChasteBuildInfo.cpp:18) ==17060== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17060== Open file descriptor 8: ==17060== at 0x698D13B: pipe2 (syscall-template.S:120) ==17060== by 0x9B7AF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17060== by 0x9B7D579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17060== by 0x9B7D774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17060== by 0x9B798AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17060== by 0x9AE00D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17060== by 0x9AE01E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17060== by 0x99EA120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17060== by 0x62270E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x622C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x622D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x622418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x625E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x5205446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17060== by 0x493B27F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17060== by 0x493B2CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17060== by 0x400E92F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==17060== by 0x400A733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17060== by 0x400C988: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17060== by 0x400C826: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17060== by 0x400CED3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17060== by 0x4008F22: main (TestChasteBuildInfo.cpp:18) ==17060== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17060== Open file descriptor 7: ==17060== at 0x698D13B: pipe2 (syscall-template.S:120) ==17060== by 0x9B7AF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17060== by 0x9B7D579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17060== by 0x9B7D774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17060== by 0x9B798AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17060== by 0x9AE00D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17060== by 0x9AE01E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17060== by 0x99EA120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17060== by 0x62270E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x622C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x622D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x622418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x625E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x5205446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17060== by 0x493B27F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17060== by 0x493B2CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17060== by 0x400E92F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==17060== by 0x400A733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17060== by 0x400C988: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17060== by 0x400C826: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17060== by 0x400CED3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17060== by 0x4008F22: main (TestChasteBuildInfo.cpp:18) ==17060== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17060== Open file descriptor 6: ==17060== at 0x699D34B: epoll_create1 (syscall-template.S:120) ==17060== by 0x9B7D6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17060== by 0x9B798AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17060== by 0x9AE00D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17060== by 0x9AE01E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17060== by 0x99EA120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17060== by 0x62270E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x622C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x622D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x622418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x625E627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17060== by 0x5205446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17060== by 0x493B27F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17060== by 0x493B2CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17060== by 0x400E92F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==17060== by 0x400A733: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17060== by 0x400C988: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17060== by 0x400C826: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17060== by 0x400CED3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17060== by 0x4008F22: main (TestChasteBuildInfo.cpp:18) ==17060== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17060== ==17060== HEAP SUMMARY: ==17060== in use at exit: 124,546 bytes in 897 blocks ==17060== total heap usage: 25,126 allocs, 24,229 frees, 10,101,152 bytes allocated ==17060== ==17060== LEAK SUMMARY: ==17060== definitely lost: 0 bytes in 0 blocks ==17060== indirectly lost: 0 bytes in 0 blocks ==17060== possibly lost: 0 bytes in 0 blocks ==17060== still reachable: 10,073 bytes in 40 blocks ==17060== suppressed: 114,473 bytes in 857 blocks ==17060== Reachable blocks (those to which a pointer was found) are not shown. ==17060== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==17060== ==17060== For lists of detected and suppressed errors, rerun with: -s ==17060== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)