==31379== Memcheck, a memory error detector
==31379== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==31379== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==31379== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellCycleModelTutorial -malloc_debug -malloc_dump -memory_info
==31379== Parent PID: 16682
==31379== 
==31379== 
==31379== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==31379== Open file descriptor 10: /dev/shm/open_mpi.0000
==31379==    at 0x13F843B6: __open_nocancel (open64_nocancel.c:39)
==31379==    by 0x13F08943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==31379==    by 0x1947D89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31379==    by 0x1947DA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31379==    by 0x1947CC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31379==    by 0x1947CF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31379==    by 0x1934C159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31379==    by 0x114A90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114AE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114AF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114A618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114E0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x104AA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31379==    by 0xFB7827F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31379==    by 0xFB782CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31379==    by 0x4170043: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==31379==    by 0x4168F11: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31379==    by 0x416CCFE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31379==    by 0x416CB22: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31379==    by 0x416D2CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31379==    by 0x4164F68: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19)
==31379== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31379== Open file descriptor 9:
==31379==    at 0x13F9284B: eventfd (syscall-template.S:120)
==31379==    by 0x194DD188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31379==    by 0x194DB395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31379==    by 0x194DB704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31379==    by 0x194DB9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31379==    by 0x194420D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31379==    by 0x194421E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31379==    by 0x1934C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31379==    by 0x114A90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114AE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114AF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114A618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114E0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x104AA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31379==    by 0xFB7827F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31379==    by 0xFB782CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31379==    by 0x4170043: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==31379==    by 0x4168F11: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31379==    by 0x416CCFE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31379==    by 0x416CB22: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31379==    by 0x416D2CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31379==    by 0x4164F68: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19)
==31379== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31379== Open file descriptor 8:
==31379==    at 0x13F8313B: pipe2 (syscall-template.S:120)
==31379==    by 0x194DCF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31379==    by 0x194DF579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31379==    by 0x194DF774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31379==    by 0x194DB8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31379==    by 0x194420D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31379==    by 0x194421E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31379==    by 0x1934C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31379==    by 0x114A90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114AE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114AF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114A618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114E0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x104AA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31379==    by 0xFB7827F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31379==    by 0xFB782CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31379==    by 0x4170043: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==31379==    by 0x4168F11: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31379==    by 0x416CCFE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31379==    by 0x416CB22: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31379==    by 0x416D2CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31379==    by 0x4164F68: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19)
==31379== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31379== Open file descriptor 7:
==31379==    at 0x13F8313B: pipe2 (syscall-template.S:120)
==31379==    by 0x194DCF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31379==    by 0x194DF579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31379==    by 0x194DF774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31379==    by 0x194DB8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31379==    by 0x194420D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31379==    by 0x194421E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31379==    by 0x1934C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31379==    by 0x114A90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114AE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114AF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114A618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114E0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x104AA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31379==    by 0xFB7827F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31379==    by 0xFB782CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31379==    by 0x4170043: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==31379==    by 0x4168F11: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31379==    by 0x416CCFE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31379==    by 0x416CB22: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31379==    by 0x416D2CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31379==    by 0x4164F68: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19)
==31379== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31379== Open file descriptor 5:
==31379==    at 0x13F9334B: epoll_create1 (syscall-template.S:120)
==31379==    by 0x194DF6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31379==    by 0x194DB8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31379==    by 0x194420D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31379==    by 0x194421E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31379==    by 0x1934C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31379==    by 0x114A90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114AE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114AF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114A618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x114E0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31379==    by 0x104AA446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31379==    by 0xFB7827F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31379==    by 0xFB782CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31379==    by 0x4170043: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==31379==    by 0x4168F11: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31379==    by 0x416CCFE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31379==    by 0x416CB22: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31379==    by 0x416D2CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31379==    by 0x4164F68: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19)
==31379== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31379== 
==31379== HEAP SUMMARY:
==31379==     in use at exit: 126,401 bytes in 898 blocks
==31379==   total heap usage: 9,017,210 allocs, 9,016,312 frees, 873,840,099 bytes allocated
==31379== 
==31379== LEAK SUMMARY:
==31379==    definitely lost: 0 bytes in 0 blocks
==31379==    indirectly lost: 0 bytes in 0 blocks
==31379==      possibly lost: 0 bytes in 0 blocks
==31379==    still reachable: 11,973 bytes in 45 blocks
==31379==         suppressed: 114,428 bytes in 853 blocks
==31379== Reachable blocks (those to which a pointer was found) are not shown.
==31379== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==31379== 
==31379== For lists of detected and suppressed errors, rerun with: -s
==31379== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)