==13826== Memcheck, a memory error detector ==13826== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==13826== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==13826== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptDivisionRules -malloc_debug -malloc_dump -memory_info ==13826== Parent PID: 13732 ==13826== ==13826== ==13826== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==13826== Open file descriptor 10: /dev/shm/open_mpi.0000 ==13826== at 0x155B23B6: __open_nocancel (open64_nocancel.c:39) ==13826== by 0x15536943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==13826== by 0x1AC2E89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13826== by 0x1AC2EA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13826== by 0x1AC2DC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13826== by 0x1AC2DF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13826== by 0x1AAFD159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13826== by 0x14E4D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E5249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E532C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E4A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E84627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x6A71446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13826== by 0x14DA827F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13826== by 0x14DA82CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13826== by 0x406AC63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13826== by 0x4064681: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13826== by 0x4067A1E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13826== by 0x4067842: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13826== by 0x4067FEB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13826== by 0x40626B8: main (TestCryptDivisionRules.cpp:19) ==13826== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13826== Open file descriptor 9: ==13826== at 0x155C084B: eventfd (syscall-template.S:120) ==13826== by 0x1AC8E188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13826== by 0x1AC8C395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13826== by 0x1AC8C704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13826== by 0x1AC8C9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13826== by 0x1ABF30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13826== by 0x1ABF31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13826== by 0x1AAFD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13826== by 0x14E4D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E5249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E532C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E4A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E84627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x6A71446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13826== by 0x14DA827F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13826== by 0x14DA82CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13826== by 0x406AC63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13826== by 0x4064681: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13826== by 0x4067A1E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13826== by 0x4067842: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13826== by 0x4067FEB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13826== by 0x40626B8: main (TestCryptDivisionRules.cpp:19) ==13826== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13826== Open file descriptor 8: ==13826== at 0x155B113B: pipe2 (syscall-template.S:120) ==13826== by 0x1AC8DF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13826== by 0x1AC90579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13826== by 0x1AC90774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13826== by 0x1AC8C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13826== by 0x1ABF30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13826== by 0x1ABF31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13826== by 0x1AAFD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13826== by 0x14E4D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E5249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E532C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E4A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E84627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x6A71446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13826== by 0x14DA827F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13826== by 0x14DA82CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13826== by 0x406AC63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13826== by 0x4064681: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13826== by 0x4067A1E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13826== by 0x4067842: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13826== by 0x4067FEB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13826== by 0x40626B8: main (TestCryptDivisionRules.cpp:19) ==13826== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13826== Open file descriptor 7: ==13826== at 0x155B113B: pipe2 (syscall-template.S:120) ==13826== by 0x1AC8DF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13826== by 0x1AC90579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13826== by 0x1AC90774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13826== by 0x1AC8C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13826== by 0x1ABF30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13826== by 0x1ABF31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13826== by 0x1AAFD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13826== by 0x14E4D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E5249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E532C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E4A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E84627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x6A71446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13826== by 0x14DA827F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13826== by 0x14DA82CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13826== by 0x406AC63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13826== by 0x4064681: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13826== by 0x4067A1E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13826== by 0x4067842: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13826== by 0x4067FEB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13826== by 0x40626B8: main (TestCryptDivisionRules.cpp:19) ==13826== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13826== Open file descriptor 6: ==13826== at 0x155C134B: epoll_create1 (syscall-template.S:120) ==13826== by 0x1AC906FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13826== by 0x1AC8C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13826== by 0x1ABF30D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13826== by 0x1ABF31E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13826== by 0x1AAFD120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13826== by 0x14E4D0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E5249F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E532C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E4A18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x14E84627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13826== by 0x6A71446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13826== by 0x14DA827F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13826== by 0x14DA82CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13826== by 0x406AC63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13826== by 0x4064681: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13826== by 0x4067A1E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13826== by 0x4067842: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13826== by 0x4067FEB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13826== by 0x40626B8: main (TestCryptDivisionRules.cpp:19) ==13826== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13826== ==13826== HEAP SUMMARY: ==13826== in use at exit: 126,474 bytes in 903 blocks ==13826== total heap usage: 37,472 allocs, 36,569 frees, 11,426,419 bytes allocated ==13826== ==13826== LEAK SUMMARY: ==13826== definitely lost: 0 bytes in 0 blocks ==13826== indirectly lost: 0 bytes in 0 blocks ==13826== possibly lost: 0 bytes in 0 blocks ==13826== still reachable: 11,997 bytes in 46 blocks ==13826== suppressed: 114,477 bytes in 857 blocks ==13826== Reachable blocks (those to which a pointer was found) are not shown. ==13826== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==13826== ==13826== For lists of detected and suppressed errors, rerun with: -s ==13826== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)