==17304== Memcheck, a memory error detector ==17304== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==17304== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==17304== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMaterialLaws -malloc_debug -malloc_dump -memory_info ==17304== Parent PID: 16335 ==17304== ==17304== ==17304== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==17304== Open file descriptor 10: /dev/shm/open_mpi.0000 ==17304== at 0x50003B6: __open_nocancel (open64_nocancel.c:39) ==17304== by 0x4F84943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==17304== by 0xFE2489E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17304== by 0xFE24A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17304== by 0xFE23C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17304== by 0xFE23F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17304== by 0xFCF3159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17304== by 0xABF10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xABF649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xABF72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xABEE18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xAC28627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0x795E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17304== by 0x4AE127F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17304== by 0x4AE12CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17304== by 0x403007C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17304== by 0x402AD3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17304== by 0x402DB74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17304== by 0x402D9A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17304== by 0x402E0E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17304== by 0x4029102: main (TestMaterialLaws.cpp:19) ==17304== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17304== Open file descriptor 9: ==17304== at 0x500E84B: eventfd (syscall-template.S:120) ==17304== by 0xFE84188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17304== by 0xFE82395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17304== by 0xFE82704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17304== by 0xFE829F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17304== by 0xFDE90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17304== by 0xFDE91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17304== by 0xFCF3120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17304== by 0xABF10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xABF649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xABF72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xABEE18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xAC28627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0x795E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17304== by 0x4AE127F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17304== by 0x4AE12CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17304== by 0x403007C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17304== by 0x402AD3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17304== by 0x402DB74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17304== by 0x402D9A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17304== by 0x402E0E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17304== by 0x4029102: main (TestMaterialLaws.cpp:19) ==17304== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17304== Open file descriptor 8: ==17304== at 0x4FFF13B: pipe2 (syscall-template.S:120) ==17304== by 0xFE83F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17304== by 0xFE86579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17304== by 0xFE86774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17304== by 0xFE828AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17304== by 0xFDE90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17304== by 0xFDE91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17304== by 0xFCF3120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17304== by 0xABF10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xABF649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xABF72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xABEE18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xAC28627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0x795E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17304== by 0x4AE127F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17304== by 0x4AE12CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17304== by 0x403007C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17304== by 0x402AD3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17304== by 0x402DB74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17304== by 0x402D9A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17304== by 0x402E0E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17304== by 0x4029102: main (TestMaterialLaws.cpp:19) ==17304== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17304== Open file descriptor 7: ==17304== at 0x4FFF13B: pipe2 (syscall-template.S:120) ==17304== by 0xFE83F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17304== by 0xFE86579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17304== by 0xFE86774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17304== by 0xFE828AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17304== by 0xFDE90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17304== by 0xFDE91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17304== by 0xFCF3120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17304== by 0xABF10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xABF649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xABF72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xABEE18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xAC28627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0x795E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17304== by 0x4AE127F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17304== by 0x4AE12CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17304== by 0x403007C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17304== by 0x402AD3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17304== by 0x402DB74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17304== by 0x402D9A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17304== by 0x402E0E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17304== by 0x4029102: main (TestMaterialLaws.cpp:19) ==17304== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17304== Open file descriptor 6: ==17304== at 0x500F34B: epoll_create1 (syscall-template.S:120) ==17304== by 0xFE866FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17304== by 0xFE828AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17304== by 0xFDE90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17304== by 0xFDE91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17304== by 0xFCF3120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17304== by 0xABF10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xABF649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xABF72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xABEE18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0xAC28627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17304== by 0x795E446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17304== by 0x4AE127F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17304== by 0x4AE12CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17304== by 0x403007C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17304== by 0x402AD3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17304== by 0x402DB74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17304== by 0x402D9A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17304== by 0x402E0E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17304== by 0x4029102: main (TestMaterialLaws.cpp:19) ==17304== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17304== ==17304== HEAP SUMMARY: ==17304== in use at exit: 126,388 bytes in 901 blocks ==17304== total heap usage: 27,821 allocs, 26,920 frees, 10,419,424 bytes allocated ==17304== ==17304== LEAK SUMMARY: ==17304== definitely lost: 0 bytes in 0 blocks ==17304== indirectly lost: 0 bytes in 0 blocks ==17304== possibly lost: 0 bytes in 0 blocks ==17304== still reachable: 11,917 bytes in 44 blocks ==17304== suppressed: 114,471 bytes in 857 blocks ==17304== Reachable blocks (those to which a pointer was found) are not shown. ==17304== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==17304== ==17304== For lists of detected and suppressed errors, rerun with: -s ==17304== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)