==31889== Memcheck, a memory error detector
==31889== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==31889== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==31889== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningSemRheologyTutorial -malloc_debug -malloc_dump -memory_info
==31889== Parent PID: 16682
==31889== 
==31889== 
==31889== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==31889== Open file descriptor 10: /dev/shm/open_mpi.0000
==31889==    at 0x13DAB3B6: __open_nocancel (open64_nocancel.c:39)
==31889==    by 0x13D2F943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==31889==    by 0x192E989E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31889==    by 0x192E9A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31889==    by 0x192E8C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31889==    by 0x192E8F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31889==    by 0x191B8159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31889==    by 0x112D00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x112D549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x112D62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x112CD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x11307627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x102AE446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31889==    by 0xF9E427F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31889==    by 0xF9E42CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31889==    by 0x4034DB3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==31889==    by 0x402F4D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31889==    by 0x4031E3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31889==    by 0x4031CD1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31889==    by 0x40323CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31889==    by 0x402D928: main (TestRunningSemRheologyTutorial.cpp:18)
==31889== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31889== Open file descriptor 9:
==31889==    at 0x13DB984B: eventfd (syscall-template.S:120)
==31889==    by 0x19349188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31889==    by 0x19347395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31889==    by 0x19347704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31889==    by 0x193479F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31889==    by 0x192AE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31889==    by 0x192AE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31889==    by 0x191B8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31889==    by 0x112D00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x112D549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x112D62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x112CD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x11307627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x102AE446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31889==    by 0xF9E427F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31889==    by 0xF9E42CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31889==    by 0x4034DB3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==31889==    by 0x402F4D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31889==    by 0x4031E3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31889==    by 0x4031CD1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31889==    by 0x40323CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31889==    by 0x402D928: main (TestRunningSemRheologyTutorial.cpp:18)
==31889== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31889== Open file descriptor 8:
==31889==    at 0x13DAA13B: pipe2 (syscall-template.S:120)
==31889==    by 0x19348F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31889==    by 0x1934B579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31889==    by 0x1934B774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31889==    by 0x193478AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31889==    by 0x192AE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31889==    by 0x192AE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31889==    by 0x191B8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31889==    by 0x112D00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x112D549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x112D62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x112CD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x11307627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x102AE446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31889==    by 0xF9E427F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31889==    by 0xF9E42CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31889==    by 0x4034DB3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==31889==    by 0x402F4D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31889==    by 0x4031E3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31889==    by 0x4031CD1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31889==    by 0x40323CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31889==    by 0x402D928: main (TestRunningSemRheologyTutorial.cpp:18)
==31889== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31889== Open file descriptor 7:
==31889==    at 0x13DAA13B: pipe2 (syscall-template.S:120)
==31889==    by 0x19348F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31889==    by 0x1934B579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31889==    by 0x1934B774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31889==    by 0x193478AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31889==    by 0x192AE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31889==    by 0x192AE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31889==    by 0x191B8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31889==    by 0x112D00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x112D549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x112D62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x112CD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x11307627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x102AE446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31889==    by 0xF9E427F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31889==    by 0xF9E42CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31889==    by 0x4034DB3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==31889==    by 0x402F4D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31889==    by 0x4031E3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31889==    by 0x4031CD1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31889==    by 0x40323CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31889==    by 0x402D928: main (TestRunningSemRheologyTutorial.cpp:18)
==31889== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31889== Open file descriptor 6:
==31889==    at 0x13DBA34B: epoll_create1 (syscall-template.S:120)
==31889==    by 0x1934B6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31889==    by 0x193478AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31889==    by 0x192AE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31889==    by 0x192AE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31889==    by 0x191B8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31889==    by 0x112D00E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x112D549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x112D62C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x112CD18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x11307627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31889==    by 0x102AE446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31889==    by 0xF9E427F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31889==    by 0xF9E42CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31889==    by 0x4034DB3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==31889==    by 0x402F4D1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31889==    by 0x4031E3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31889==    by 0x4031CD1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31889==    by 0x40323CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31889==    by 0x402D928: main (TestRunningSemRheologyTutorial.cpp:18)
==31889== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31889== 
==31889== HEAP SUMMARY:
==31889==     in use at exit: 127,233 bytes in 900 blocks
==31889==   total heap usage: 13,878,120 allocs, 13,877,220 frees, 684,977,676 bytes allocated
==31889== 
==31889== LEAK SUMMARY:
==31889==    definitely lost: 0 bytes in 0 blocks
==31889==    indirectly lost: 0 bytes in 0 blocks
==31889==      possibly lost: 0 bytes in 0 blocks
==31889==    still reachable: 12,101 bytes in 46 blocks
==31889==         suppressed: 115,132 bytes in 854 blocks
==31889== Reachable blocks (those to which a pointer was found) are not shown.
==31889== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==31889== 
==31889== For lists of detected and suppressed errors, rerun with: -s
==31889== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 34 from 34)