==16771== Memcheck, a memory error detector
==16771== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==16771== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==16771== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimpleCellCycleModels -malloc_debug -malloc_dump -memory_info
==16771== Parent PID: 16682
==16771== 
==16771== 
==16771== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==16771== Open file descriptor 10: /dev/shm/open_mpi.0000
==16771==    at 0xFEF03B6: __open_nocancel (open64_nocancel.c:39)
==16771==    by 0xFE74943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==16771==    by 0x174C189E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16771==    by 0x174C1A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16771==    by 0x174C0C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16771==    by 0x174C0F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16771==    by 0x17390159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16771==    by 0xF7890E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF78E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF78F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF78618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF7C0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xE78A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16771==    by 0xDE5627F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16771==    by 0xDE562CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16771==    by 0x404545B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16771==    by 0x403D92F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16771==    by 0x4040B1A: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16771==    by 0x4040948: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16771==    by 0x404108D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16771==    by 0x4039D32: main (TestSimpleCellCycleModels.cpp:19)
==16771== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16771== Open file descriptor 9:
==16771==    at 0xFEFE84B: eventfd (syscall-template.S:120)
==16771==    by 0x17521188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16771==    by 0x1751F395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16771==    by 0x1751F704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16771==    by 0x1751F9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16771==    by 0x174860D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16771==    by 0x174861E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16771==    by 0x17390120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16771==    by 0xF7890E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF78E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF78F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF78618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF7C0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xE78A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16771==    by 0xDE5627F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16771==    by 0xDE562CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16771==    by 0x404545B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16771==    by 0x403D92F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16771==    by 0x4040B1A: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16771==    by 0x4040948: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16771==    by 0x404108D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16771==    by 0x4039D32: main (TestSimpleCellCycleModels.cpp:19)
==16771== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16771== Open file descriptor 8:
==16771==    at 0xFEEF13B: pipe2 (syscall-template.S:120)
==16771==    by 0x17520F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16771==    by 0x17523579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16771==    by 0x17523774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16771==    by 0x1751F8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16771==    by 0x174860D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16771==    by 0x174861E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16771==    by 0x17390120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16771==    by 0xF7890E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF78E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF78F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF78618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF7C0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xE78A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16771==    by 0xDE5627F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16771==    by 0xDE562CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16771==    by 0x404545B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16771==    by 0x403D92F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16771==    by 0x4040B1A: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16771==    by 0x4040948: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16771==    by 0x404108D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16771==    by 0x4039D32: main (TestSimpleCellCycleModels.cpp:19)
==16771== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16771== Open file descriptor 7:
==16771==    at 0xFEEF13B: pipe2 (syscall-template.S:120)
==16771==    by 0x17520F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16771==    by 0x17523579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16771==    by 0x17523774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16771==    by 0x1751F8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16771==    by 0x174860D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16771==    by 0x174861E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16771==    by 0x17390120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16771==    by 0xF7890E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF78E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF78F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF78618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF7C0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xE78A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16771==    by 0xDE5627F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16771==    by 0xDE562CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16771==    by 0x404545B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16771==    by 0x403D92F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16771==    by 0x4040B1A: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16771==    by 0x4040948: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16771==    by 0x404108D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16771==    by 0x4039D32: main (TestSimpleCellCycleModels.cpp:19)
==16771== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16771== Open file descriptor 6:
==16771==    at 0xFEFF34B: epoll_create1 (syscall-template.S:120)
==16771==    by 0x175236FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16771==    by 0x1751F8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16771==    by 0x174860D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16771==    by 0x174861E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16771==    by 0x17390120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16771==    by 0xF7890E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF78E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF78F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF78618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xF7C0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16771==    by 0xE78A446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16771==    by 0xDE5627F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16771==    by 0xDE562CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16771==    by 0x404545B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16771==    by 0x403D92F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16771==    by 0x4040B1A: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16771==    by 0x4040948: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16771==    by 0x404108D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16771==    by 0x4039D32: main (TestSimpleCellCycleModels.cpp:19)
==16771== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16771== 
==16771== HEAP SUMMARY:
==16771==     in use at exit: 126,485 bytes in 903 blocks
==16771==   total heap usage: 59,799 allocs, 58,896 frees, 14,331,676 bytes allocated
==16771== 
==16771== LEAK SUMMARY:
==16771==    definitely lost: 0 bytes in 0 blocks
==16771==    indirectly lost: 0 bytes in 0 blocks
==16771==      possibly lost: 0 bytes in 0 blocks
==16771==    still reachable: 12,005 bytes in 46 blocks
==16771==         suppressed: 114,480 bytes in 857 blocks
==16771== Reachable blocks (those to which a pointer was found) are not shown.
==16771== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==16771== 
==16771== For lists of detected and suppressed errors, rerun with: -s
==16771== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)