==32032== Memcheck, a memory error detector
==32032== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==32032== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==32032== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestVisualizingWithParaviewTutorial -malloc_debug -malloc_dump -memory_info
==32032== Parent PID: 16682
==32032== 
==32032== 
==32032== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==32032== Open file descriptor 10: /dev/shm/open_mpi.0000
==32032==    at 0x13CB23B6: __open_nocancel (open64_nocancel.c:39)
==32032==    by 0x13C36943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==32032==    by 0x192D289E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==32032==    by 0x192D2A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==32032==    by 0x192D1C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==32032==    by 0x192D1F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==32032==    by 0x191A1159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==32032==    by 0x112B90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112BE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112BF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112B618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112F0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x10297446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==32032==    by 0xF9CD27F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==32032==    by 0xF9CD2CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==32032==    by 0x40239F3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==32032==    by 0x401E861: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==32032==    by 0x40211DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==32032==    by 0x4021071: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==32032==    by 0x402176B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==32032==    by 0x401CCB8: main (TestVisualizingWithParaviewTutorial.cpp:18)
==32032== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==32032== Open file descriptor 9:
==32032==    at 0x13CC084B: eventfd (syscall-template.S:120)
==32032==    by 0x19332188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==32032==    by 0x19330395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==32032==    by 0x19330704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==32032==    by 0x193309F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==32032==    by 0x192970D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==32032==    by 0x192971E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==32032==    by 0x191A1120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==32032==    by 0x112B90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112BE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112BF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112B618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112F0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x10297446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==32032==    by 0xF9CD27F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==32032==    by 0xF9CD2CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==32032==    by 0x40239F3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==32032==    by 0x401E861: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==32032==    by 0x40211DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==32032==    by 0x4021071: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==32032==    by 0x402176B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==32032==    by 0x401CCB8: main (TestVisualizingWithParaviewTutorial.cpp:18)
==32032== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==32032== Open file descriptor 8:
==32032==    at 0x13CB113B: pipe2 (syscall-template.S:120)
==32032==    by 0x19331F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==32032==    by 0x19334579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==32032==    by 0x19334774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==32032==    by 0x193308AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==32032==    by 0x192970D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==32032==    by 0x192971E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==32032==    by 0x191A1120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==32032==    by 0x112B90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112BE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112BF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112B618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112F0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x10297446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==32032==    by 0xF9CD27F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==32032==    by 0xF9CD2CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==32032==    by 0x40239F3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==32032==    by 0x401E861: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==32032==    by 0x40211DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==32032==    by 0x4021071: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==32032==    by 0x402176B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==32032==    by 0x401CCB8: main (TestVisualizingWithParaviewTutorial.cpp:18)
==32032== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==32032== Open file descriptor 7:
==32032==    at 0x13CB113B: pipe2 (syscall-template.S:120)
==32032==    by 0x19331F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==32032==    by 0x19334579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==32032==    by 0x19334774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==32032==    by 0x193308AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==32032==    by 0x192970D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==32032==    by 0x192971E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==32032==    by 0x191A1120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==32032==    by 0x112B90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112BE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112BF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112B618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112F0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x10297446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==32032==    by 0xF9CD27F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==32032==    by 0xF9CD2CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==32032==    by 0x40239F3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==32032==    by 0x401E861: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==32032==    by 0x40211DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==32032==    by 0x4021071: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==32032==    by 0x402176B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==32032==    by 0x401CCB8: main (TestVisualizingWithParaviewTutorial.cpp:18)
==32032== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==32032== Open file descriptor 6:
==32032==    at 0x13CC134B: epoll_create1 (syscall-template.S:120)
==32032==    by 0x193346FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==32032==    by 0x193308AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==32032==    by 0x192970D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==32032==    by 0x192971E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==32032==    by 0x191A1120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==32032==    by 0x112B90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112BE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112BF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112B618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x112F0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==32032==    by 0x10297446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==32032==    by 0xF9CD27F: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==32032==    by 0xF9CD2CD: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==32032==    by 0x40239F3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==32032==    by 0x401E861: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==32032==    by 0x40211DE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==32032==    by 0x4021071: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==32032==    by 0x402176B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==32032==    by 0x401CCB8: main (TestVisualizingWithParaviewTutorial.cpp:18)
==32032== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==32032== 
==32032== HEAP SUMMARY:
==32032==     in use at exit: 128,678 bytes in 902 blocks
==32032==   total heap usage: 11,262,696 allocs, 11,261,794 frees, 1,503,177,955 bytes allocated
==32032== 
==32032== LEAK SUMMARY:
==32032==    definitely lost: 0 bytes in 0 blocks
==32032==    indirectly lost: 0 bytes in 0 blocks
==32032==      possibly lost: 0 bytes in 0 blocks
==32032==    still reachable: 12,101 bytes in 46 blocks
==32032==         suppressed: 116,577 bytes in 856 blocks
==32032== Reachable blocks (those to which a pointer was found) are not shown.
==32032== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==32032== 
==32032== For lists of detected and suppressed errors, rerun with: -s
==32032== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 36 from 36)