==16758== Memcheck, a memory error detector
==16758== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==16758== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==16758== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractAnalyticJacobian -malloc_debug -malloc_dump -memory_info
==16758== Parent PID: 16081
==16758== 
==16758== 
==16758== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==16758== Open file descriptor 10: /dev/shm/open_mpi.0000
==16758==    at 0x4FB93B6: __open_nocancel (open64_nocancel.c:39)
==16758==    by 0x4F3D943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==16758==    by 0x78C589E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16758==    by 0x78C5A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16758==    by 0x78C4C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16758==    by 0x78C4F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16758==    by 0x7794159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16758==    by 0x52220E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x522749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x52282C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x521F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x5259627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x5F60446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16758==    by 0x4B790AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16758==    by 0x4B790F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16758==    by 0x4015F0A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16758==    by 0x40111DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16758==    by 0x4013694: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16758==    by 0x4013531: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16758==    by 0x4013BDF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16758==    by 0x400F672: main (TestAbstractAnalyticJacobian.cpp:18)
==16758== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16758== Open file descriptor 9:
==16758==    at 0x4FC784B: eventfd (syscall-template.S:120)
==16758==    by 0x7925188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16758==    by 0x7923395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16758==    by 0x7923704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16758==    by 0x79239F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16758==    by 0x788A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16758==    by 0x788A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16758==    by 0x7794120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16758==    by 0x52220E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x522749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x52282C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x521F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x5259627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x5F60446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16758==    by 0x4B790AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16758==    by 0x4B790F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16758==    by 0x4015F0A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16758==    by 0x40111DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16758==    by 0x4013694: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16758==    by 0x4013531: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16758==    by 0x4013BDF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16758==    by 0x400F672: main (TestAbstractAnalyticJacobian.cpp:18)
==16758== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16758== Open file descriptor 8:
==16758==    at 0x4FB813B: pipe2 (syscall-template.S:120)
==16758==    by 0x7924F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16758==    by 0x7927579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16758==    by 0x7927774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16758==    by 0x79238AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16758==    by 0x788A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16758==    by 0x788A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16758==    by 0x7794120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16758==    by 0x52220E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x522749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x52282C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x521F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x5259627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x5F60446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16758==    by 0x4B790AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16758==    by 0x4B790F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16758==    by 0x4015F0A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16758==    by 0x40111DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16758==    by 0x4013694: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16758==    by 0x4013531: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16758==    by 0x4013BDF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16758==    by 0x400F672: main (TestAbstractAnalyticJacobian.cpp:18)
==16758== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16758== Open file descriptor 7:
==16758==    at 0x4FB813B: pipe2 (syscall-template.S:120)
==16758==    by 0x7924F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16758==    by 0x7927579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16758==    by 0x7927774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16758==    by 0x79238AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16758==    by 0x788A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16758==    by 0x788A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16758==    by 0x7794120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16758==    by 0x52220E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x522749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x52282C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x521F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x5259627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x5F60446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16758==    by 0x4B790AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16758==    by 0x4B790F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16758==    by 0x4015F0A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16758==    by 0x40111DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16758==    by 0x4013694: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16758==    by 0x4013531: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16758==    by 0x4013BDF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16758==    by 0x400F672: main (TestAbstractAnalyticJacobian.cpp:18)
==16758== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16758== Open file descriptor 6:
==16758==    at 0x4FC834B: epoll_create1 (syscall-template.S:120)
==16758==    by 0x79276FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16758==    by 0x79238AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16758==    by 0x788A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16758==    by 0x788A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16758==    by 0x7794120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16758==    by 0x52220E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x522749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x52282C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x521F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x5259627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16758==    by 0x5F60446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16758==    by 0x4B790AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16758==    by 0x4B790F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16758==    by 0x4015F0A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16758==    by 0x40111DF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16758==    by 0x4013694: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16758==    by 0x4013531: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16758==    by 0x4013BDF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16758==    by 0x400F672: main (TestAbstractAnalyticJacobian.cpp:18)
==16758== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16758== 
==16758== HEAP SUMMARY:
==16758==     in use at exit: 124,588 bytes in 897 blocks
==16758==   total heap usage: 25,236 allocs, 24,339 frees, 10,105,009 bytes allocated
==16758== 
==16758== LEAK SUMMARY:
==16758==    definitely lost: 0 bytes in 0 blocks
==16758==    indirectly lost: 0 bytes in 0 blocks
==16758==      possibly lost: 0 bytes in 0 blocks
==16758==    still reachable: 10,105 bytes in 40 blocks
==16758==         suppressed: 114,483 bytes in 857 blocks
==16758== Reachable blocks (those to which a pointer was found) are not shown.
==16758== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==16758== 
==16758== For lists of detected and suppressed errors, rerun with: -s
==16758== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)