==16118== Memcheck, a memory error detector ==16118== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==16118== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==16118== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestExecutableSupport -malloc_debug -malloc_dump -memory_info ==16118== Parent PID: 16081 ==16118== ==16118== ==16118== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==16118== Open file descriptor 10: /dev/shm/open_mpi.0000 ==16118== at 0x4D813B6: __open_nocancel (open64_nocancel.c:39) ==16118== by 0x4D05943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==16118== by 0x719B89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16118== by 0x719BA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16118== by 0x719AC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16118== by 0x719AF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16118== by 0x706A159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16118== by 0x4F080E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F0D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F0E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F0518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F3F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x5B64446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16118== by 0x49169DA: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:96) ==16118== by 0x49187A4: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:312) ==16118== by 0x400F545: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==16118== by 0x400F934: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==16118== by 0x400A9FA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==16118== by 0x400D7E6: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==16118== by 0x400D6B7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==16118== by 0x400D549: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==16118== by 0x400D3AE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16118== by 0x400DA5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16118== by 0x40099B2: main (TestExecutableSupport.cpp:18) ==16118== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16118== Open file descriptor 9: ==16118== at 0x4D8F84B: eventfd (syscall-template.S:120) ==16118== by 0x71FB188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16118== by 0x71F9395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16118== by 0x71F9704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16118== by 0x71F99F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16118== by 0x71600D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16118== by 0x71601E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16118== by 0x706A120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16118== by 0x4F080E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F0D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F0E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F0518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F3F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x5B64446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16118== by 0x49169DA: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:96) ==16118== by 0x49187A4: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:312) ==16118== by 0x400F545: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==16118== by 0x400F934: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==16118== by 0x400A9FA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==16118== by 0x400D7E6: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==16118== by 0x400D6B7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==16118== by 0x400D549: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==16118== by 0x400D3AE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16118== by 0x400DA5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16118== by 0x40099B2: main (TestExecutableSupport.cpp:18) ==16118== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16118== Open file descriptor 8: ==16118== at 0x4D8013B: pipe2 (syscall-template.S:120) ==16118== by 0x71FAF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16118== by 0x71FD579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16118== by 0x71FD774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16118== by 0x71F98AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16118== by 0x71600D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16118== by 0x71601E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16118== by 0x706A120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16118== by 0x4F080E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F0D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F0E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F0518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F3F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x5B64446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16118== by 0x49169DA: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:96) ==16118== by 0x49187A4: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:312) ==16118== by 0x400F545: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==16118== by 0x400F934: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==16118== by 0x400A9FA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==16118== by 0x400D7E6: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==16118== by 0x400D6B7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==16118== by 0x400D549: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==16118== by 0x400D3AE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16118== by 0x400DA5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16118== by 0x40099B2: main (TestExecutableSupport.cpp:18) ==16118== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16118== Open file descriptor 7: ==16118== at 0x4D8013B: pipe2 (syscall-template.S:120) ==16118== by 0x71FAF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16118== by 0x71FD579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16118== by 0x71FD774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16118== by 0x71F98AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16118== by 0x71600D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16118== by 0x71601E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16118== by 0x706A120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16118== by 0x4F080E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F0D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F0E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F0518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F3F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x5B64446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16118== by 0x49169DA: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:96) ==16118== by 0x49187A4: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:312) ==16118== by 0x400F545: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==16118== by 0x400F934: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==16118== by 0x400A9FA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==16118== by 0x400D7E6: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==16118== by 0x400D6B7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==16118== by 0x400D549: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==16118== by 0x400D3AE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16118== by 0x400DA5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16118== by 0x40099B2: main (TestExecutableSupport.cpp:18) ==16118== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16118== Open file descriptor 4: ==16118== at 0x4D9034B: epoll_create1 (syscall-template.S:120) ==16118== by 0x71FD6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16118== by 0x71F98AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16118== by 0x71600D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16118== by 0x71601E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16118== by 0x706A120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16118== by 0x4F080E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F0D49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F0E2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F0518F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x4F3F627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16118== by 0x5B64446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16118== by 0x49169DA: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:96) ==16118== by 0x49187A4: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:312) ==16118== by 0x400F545: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==16118== by 0x400F934: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==16118== by 0x400A9FA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==16118== by 0x400D7E6: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==16118== by 0x400D6B7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==16118== by 0x400D549: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==16118== by 0x400D3AE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16118== by 0x400DA5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16118== by 0x40099B2: main (TestExecutableSupport.cpp:18) ==16118== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16118== ==16118== HEAP SUMMARY: ==16118== in use at exit: 124,549 bytes in 897 blocks ==16118== total heap usage: 25,559 allocs, 24,662 frees, 10,262,318 bytes allocated ==16118== ==16118== LEAK SUMMARY: ==16118== definitely lost: 0 bytes in 0 blocks ==16118== indirectly lost: 0 bytes in 0 blocks ==16118== possibly lost: 0 bytes in 0 blocks ==16118== still reachable: 10,073 bytes in 40 blocks ==16118== suppressed: 114,476 bytes in 857 blocks ==16118== Reachable blocks (those to which a pointer was found) are not shown. ==16118== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==16118== ==16118== For lists of detected and suppressed errors, rerun with: -s ==16118== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)