==17003== Memcheck, a memory error detector ==17003== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==17003== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==17003== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMaterialLaws -malloc_debug -malloc_dump -memory_info ==17003== Parent PID: 16081 ==17003== ==17003== ==17003== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==17003== Open file descriptor 10: /dev/shm/open_mpi.0000 ==17003== at 0x50093B6: __open_nocancel (open64_nocancel.c:39) ==17003== by 0x4F8D943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==17003== by 0xFD4989E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17003== by 0xFD49A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17003== by 0xFD48C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17003== by 0xFD48F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17003== by 0xFC18159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17003== by 0xAB160E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB1B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB1C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB1318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB4D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0x7883446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17003== by 0x4AE70AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17003== by 0x4AE70F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17003== by 0x403007C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17003== by 0x402AD3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17003== by 0x402DB74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17003== by 0x402D9A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17003== by 0x402E0E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17003== by 0x4029102: main (TestMaterialLaws.cpp:19) ==17003== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17003== Open file descriptor 9: ==17003== at 0x501784B: eventfd (syscall-template.S:120) ==17003== by 0xFDA9188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17003== by 0xFDA7395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17003== by 0xFDA7704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17003== by 0xFDA79F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17003== by 0xFD0E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17003== by 0xFD0E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17003== by 0xFC18120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17003== by 0xAB160E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB1B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB1C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB1318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB4D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0x7883446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17003== by 0x4AE70AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17003== by 0x4AE70F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17003== by 0x403007C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17003== by 0x402AD3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17003== by 0x402DB74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17003== by 0x402D9A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17003== by 0x402E0E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17003== by 0x4029102: main (TestMaterialLaws.cpp:19) ==17003== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17003== Open file descriptor 8: ==17003== at 0x500813B: pipe2 (syscall-template.S:120) ==17003== by 0xFDA8F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17003== by 0xFDAB579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17003== by 0xFDAB774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17003== by 0xFDA78AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17003== by 0xFD0E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17003== by 0xFD0E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17003== by 0xFC18120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17003== by 0xAB160E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB1B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB1C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB1318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB4D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0x7883446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17003== by 0x4AE70AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17003== by 0x4AE70F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17003== by 0x403007C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17003== by 0x402AD3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17003== by 0x402DB74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17003== by 0x402D9A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17003== by 0x402E0E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17003== by 0x4029102: main (TestMaterialLaws.cpp:19) ==17003== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17003== Open file descriptor 7: ==17003== at 0x500813B: pipe2 (syscall-template.S:120) ==17003== by 0xFDA8F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17003== by 0xFDAB579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17003== by 0xFDAB774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17003== by 0xFDA78AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17003== by 0xFD0E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17003== by 0xFD0E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17003== by 0xFC18120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17003== by 0xAB160E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB1B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB1C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB1318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB4D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0x7883446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17003== by 0x4AE70AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17003== by 0x4AE70F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17003== by 0x403007C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17003== by 0x402AD3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17003== by 0x402DB74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17003== by 0x402D9A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17003== by 0x402E0E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17003== by 0x4029102: main (TestMaterialLaws.cpp:19) ==17003== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17003== Open file descriptor 6: ==17003== at 0x501834B: epoll_create1 (syscall-template.S:120) ==17003== by 0xFDAB6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17003== by 0xFDA78AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==17003== by 0xFD0E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17003== by 0xFD0E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17003== by 0xFC18120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==17003== by 0xAB160E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB1B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB1C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB1318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0xAB4D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==17003== by 0x7883446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==17003== by 0x4AE70AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==17003== by 0x4AE70F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==17003== by 0x403007C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==17003== by 0x402AD3D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==17003== by 0x402DB74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==17003== by 0x402D9A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==17003== by 0x402E0E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==17003== by 0x4029102: main (TestMaterialLaws.cpp:19) ==17003== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==17003== ==17003== HEAP SUMMARY: ==17003== in use at exit: 126,388 bytes in 901 blocks ==17003== total heap usage: 27,800 allocs, 26,899 frees, 10,417,802 bytes allocated ==17003== ==17003== LEAK SUMMARY: ==17003== definitely lost: 0 bytes in 0 blocks ==17003== indirectly lost: 0 bytes in 0 blocks ==17003== possibly lost: 0 bytes in 0 blocks ==17003== still reachable: 11,917 bytes in 44 blocks ==17003== suppressed: 114,471 bytes in 857 blocks ==17003== Reachable blocks (those to which a pointer was found) are not shown. ==17003== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==17003== ==17003== For lists of detected and suppressed errors, rerun with: -s ==17003== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)