==16666== Memcheck, a memory error detector
==16666== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==16666== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==16666== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestMeshWriters -malloc_debug -malloc_dump -memory_info
==16666== Parent PID: 16081
==16666== 
==16666== 
==16666== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==16666== Open file descriptor 10: /dev/shm/open_mpi.0000
==16666==    at 0xA8623B6: __open_nocancel (open64_nocancel.c:39)
==16666==    by 0xA7E6943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==16666==    by 0xF7A289E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16666==    by 0xF7A2A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16666==    by 0xF7A1C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16666==    by 0xF7A1F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16666==    by 0xF671159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16666==    by 0x7D870E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7D8C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7D8D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7D8418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7DBE627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x6D63446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16666==    by 0x64960AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16666==    by 0x64960F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16666==    by 0x4051E83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16666==    by 0x4049E91: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16666==    by 0x404D4CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16666==    by 0x404D2F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16666==    by 0x404DA9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16666==    by 0x4047EC8: main (TestMeshWriters.cpp:19)
==16666== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16666== Open file descriptor 9:
==16666==    at 0xA87084B: eventfd (syscall-template.S:120)
==16666==    by 0xF802188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16666==    by 0xF800395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16666==    by 0xF800704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16666==    by 0xF8009F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16666==    by 0xF7670D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16666==    by 0xF7671E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16666==    by 0xF671120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16666==    by 0x7D870E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7D8C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7D8D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7D8418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7DBE627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x6D63446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16666==    by 0x64960AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16666==    by 0x64960F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16666==    by 0x4051E83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16666==    by 0x4049E91: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16666==    by 0x404D4CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16666==    by 0x404D2F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16666==    by 0x404DA9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16666==    by 0x4047EC8: main (TestMeshWriters.cpp:19)
==16666== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16666== Open file descriptor 8:
==16666==    at 0xA86113B: pipe2 (syscall-template.S:120)
==16666==    by 0xF801F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16666==    by 0xF804579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16666==    by 0xF804774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16666==    by 0xF8008AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16666==    by 0xF7670D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16666==    by 0xF7671E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16666==    by 0xF671120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16666==    by 0x7D870E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7D8C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7D8D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7D8418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7DBE627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x6D63446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16666==    by 0x64960AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16666==    by 0x64960F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16666==    by 0x4051E83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16666==    by 0x4049E91: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16666==    by 0x404D4CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16666==    by 0x404D2F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16666==    by 0x404DA9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16666==    by 0x4047EC8: main (TestMeshWriters.cpp:19)
==16666== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16666== Open file descriptor 7:
==16666==    at 0xA86113B: pipe2 (syscall-template.S:120)
==16666==    by 0xF801F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16666==    by 0xF804579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16666==    by 0xF804774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16666==    by 0xF8008AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16666==    by 0xF7670D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16666==    by 0xF7671E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16666==    by 0xF671120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16666==    by 0x7D870E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7D8C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7D8D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7D8418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7DBE627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x6D63446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16666==    by 0x64960AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16666==    by 0x64960F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16666==    by 0x4051E83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16666==    by 0x4049E91: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16666==    by 0x404D4CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16666==    by 0x404D2F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16666==    by 0x404DA9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16666==    by 0x4047EC8: main (TestMeshWriters.cpp:19)
==16666== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16666== Open file descriptor 6:
==16666==    at 0xA87134B: epoll_create1 (syscall-template.S:120)
==16666==    by 0xF8046FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16666==    by 0xF8008AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16666==    by 0xF7670D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16666==    by 0xF7671E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16666==    by 0xF671120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16666==    by 0x7D870E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7D8C49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7D8D2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7D8418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x7DBE627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16666==    by 0x6D63446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16666==    by 0x64960AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16666==    by 0x64960F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16666==    by 0x4051E83: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==16666==    by 0x4049E91: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16666==    by 0x404D4CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16666==    by 0x404D2F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16666==    by 0x404DA9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16666==    by 0x4047EC8: main (TestMeshWriters.cpp:19)
==16666== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16666== 
==16666== HEAP SUMMARY:
==16666==     in use at exit: 126,363 bytes in 901 blocks
==16666==   total heap usage: 167,752 allocs, 166,851 frees, 24,367,609 bytes allocated
==16666== 
==16666== LEAK SUMMARY:
==16666==    definitely lost: 0 bytes in 0 blocks
==16666==    indirectly lost: 0 bytes in 0 blocks
==16666==      possibly lost: 0 bytes in 0 blocks
==16666==    still reachable: 11,893 bytes in 44 blocks
==16666==         suppressed: 114,470 bytes in 857 blocks
==16666== Reachable blocks (those to which a pointer was found) are not shown.
==16666== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==16666== 
==16666== For lists of detected and suppressed errors, rerun with: -s
==16666== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)