==30228== Memcheck, a memory error detector
==30228== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==30228== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==30228== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningContactInhibitionSimulationsTutorial -malloc_debug -malloc_dump -memory_info
==30228== Parent PID: 15533
==30228== 
==30228== 
==30228== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==30228== Open file descriptor 10: /dev/shm/open_mpi.0000
==30228==    at 0x133113B6: __open_nocancel (open64_nocancel.c:39)
==30228==    by 0x13295943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==30228==    by 0x1884F89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30228==    by 0x1884FA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30228==    by 0x1884EC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30228==    by 0x1884EF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30228==    by 0x1871E159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30228==    by 0x108360E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1083B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1083C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1083318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1086D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0xF814446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==30228==    by 0xEF470AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==30228==    by 0xEF470F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==30228==    by 0x402A173: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==30228==    by 0x4024C31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==30228==    by 0x40273BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==30228==    by 0x4027251: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==30228==    by 0x402794B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==30228==    by 0x4023088: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18)
==30228== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==30228== Open file descriptor 9:
==30228==    at 0x1331F84B: eventfd (syscall-template.S:120)
==30228==    by 0x188AF188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30228==    by 0x188AD395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30228==    by 0x188AD704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30228==    by 0x188AD9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30228==    by 0x188140D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30228==    by 0x188141E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30228==    by 0x1871E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30228==    by 0x108360E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1083B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1083C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1083318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1086D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0xF814446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==30228==    by 0xEF470AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==30228==    by 0xEF470F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==30228==    by 0x402A173: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==30228==    by 0x4024C31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==30228==    by 0x40273BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==30228==    by 0x4027251: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==30228==    by 0x402794B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==30228==    by 0x4023088: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18)
==30228== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==30228== Open file descriptor 8:
==30228==    at 0x1331013B: pipe2 (syscall-template.S:120)
==30228==    by 0x188AEF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30228==    by 0x188B1579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30228==    by 0x188B1774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30228==    by 0x188AD8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30228==    by 0x188140D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30228==    by 0x188141E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30228==    by 0x1871E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30228==    by 0x108360E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1083B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1083C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1083318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1086D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0xF814446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==30228==    by 0xEF470AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==30228==    by 0xEF470F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==30228==    by 0x402A173: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==30228==    by 0x4024C31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==30228==    by 0x40273BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==30228==    by 0x4027251: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==30228==    by 0x402794B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==30228==    by 0x4023088: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18)
==30228== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==30228== Open file descriptor 7:
==30228==    at 0x1331013B: pipe2 (syscall-template.S:120)
==30228==    by 0x188AEF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30228==    by 0x188B1579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30228==    by 0x188B1774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30228==    by 0x188AD8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30228==    by 0x188140D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30228==    by 0x188141E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30228==    by 0x1871E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30228==    by 0x108360E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1083B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1083C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1083318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1086D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0xF814446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==30228==    by 0xEF470AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==30228==    by 0xEF470F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==30228==    by 0x402A173: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==30228==    by 0x4024C31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==30228==    by 0x40273BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==30228==    by 0x4027251: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==30228==    by 0x402794B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==30228==    by 0x4023088: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18)
==30228== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==30228== Open file descriptor 6:
==30228==    at 0x1332034B: epoll_create1 (syscall-template.S:120)
==30228==    by 0x188B16FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30228==    by 0x188AD8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30228==    by 0x188140D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30228==    by 0x188141E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30228==    by 0x1871E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30228==    by 0x108360E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1083B49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1083C2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1083318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0x1086D627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30228==    by 0xF814446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==30228==    by 0xEF470AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==30228==    by 0xEF470F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==30228==    by 0x402A173: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==30228==    by 0x4024C31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==30228==    by 0x40273BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==30228==    by 0x4027251: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==30228==    by 0x402794B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==30228==    by 0x4023088: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18)
==30228== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==30228== 
==30228== HEAP SUMMARY:
==30228==     in use at exit: 128,876 bytes in 930 blocks
==30228==   total heap usage: 11,490,009 allocs, 11,489,079 frees, 3,497,535,736 bytes allocated
==30228== 
==30228== LEAK SUMMARY:
==30228==    definitely lost: 0 bytes in 0 blocks
==30228==    indirectly lost: 0 bytes in 0 blocks
==30228==      possibly lost: 0 bytes in 0 blocks
==30228==    still reachable: 11,973 bytes in 45 blocks
==30228==         suppressed: 116,903 bytes in 885 blocks
==30228== Reachable blocks (those to which a pointer was found) are not shown.
==30228== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==30228== 
==30228== For lists of detected and suppressed errors, rerun with: -s
==30228== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)