==30258== Memcheck, a memory error detector
==30258== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==30258== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==30258== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info
==30258== Parent PID: 15533
==30258== 
==30258== 
==30258== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==30258== Open file descriptor 10: /dev/shm/open_mpi.0000
==30258==    at 0x116103B6: __open_nocancel (open64_nocancel.c:39)
==30258==    by 0x11594943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==30258==    by 0x163E489E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30258==    by 0x163E4A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30258==    by 0x163E3C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30258==    by 0x163E3F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30258==    by 0x162B3159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30258==    by 0x11E140E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E1949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E1A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E1118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E4B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x12A72446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==30258==    by 0xEF3E0AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==30258==    by 0xEF3E0F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==30258==    by 0x4022D94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==30258==    by 0x401DD81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==30258==    by 0x40204EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==30258==    by 0x4020381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==30258==    by 0x4020A7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==30258==    by 0x401C1D8: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18)
==30258== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==30258== Open file descriptor 9:
==30258==    at 0x1161E84B: eventfd (syscall-template.S:120)
==30258==    by 0x16444188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30258==    by 0x16442395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30258==    by 0x16442704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30258==    by 0x164429F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30258==    by 0x163A90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30258==    by 0x163A91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30258==    by 0x162B3120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30258==    by 0x11E140E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E1949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E1A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E1118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E4B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x12A72446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==30258==    by 0xEF3E0AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==30258==    by 0xEF3E0F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==30258==    by 0x4022D94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==30258==    by 0x401DD81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==30258==    by 0x40204EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==30258==    by 0x4020381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==30258==    by 0x4020A7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==30258==    by 0x401C1D8: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18)
==30258== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==30258== Open file descriptor 8:
==30258==    at 0x1160F13B: pipe2 (syscall-template.S:120)
==30258==    by 0x16443F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30258==    by 0x16446579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30258==    by 0x16446774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30258==    by 0x164428AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30258==    by 0x163A90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30258==    by 0x163A91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30258==    by 0x162B3120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30258==    by 0x11E140E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E1949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E1A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E1118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E4B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x12A72446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==30258==    by 0xEF3E0AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==30258==    by 0xEF3E0F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==30258==    by 0x4022D94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==30258==    by 0x401DD81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==30258==    by 0x40204EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==30258==    by 0x4020381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==30258==    by 0x4020A7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==30258==    by 0x401C1D8: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18)
==30258== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==30258== Open file descriptor 7:
==30258==    at 0x1160F13B: pipe2 (syscall-template.S:120)
==30258==    by 0x16443F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30258==    by 0x16446579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30258==    by 0x16446774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30258==    by 0x164428AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30258==    by 0x163A90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30258==    by 0x163A91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30258==    by 0x162B3120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30258==    by 0x11E140E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E1949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E1A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E1118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E4B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x12A72446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==30258==    by 0xEF3E0AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==30258==    by 0xEF3E0F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==30258==    by 0x4022D94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==30258==    by 0x401DD81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==30258==    by 0x40204EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==30258==    by 0x4020381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==30258==    by 0x4020A7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==30258==    by 0x401C1D8: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18)
==30258== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==30258== Open file descriptor 5:
==30258==    at 0x1161F34B: epoll_create1 (syscall-template.S:120)
==30258==    by 0x164466FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30258==    by 0x164428AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30258==    by 0x163A90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30258==    by 0x163A91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30258==    by 0x162B3120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30258==    by 0x11E140E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E1949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E1A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E1118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x11E4B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30258==    by 0x12A72446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==30258==    by 0xEF3E0AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==30258==    by 0xEF3E0F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==30258==    by 0x4022D94: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==30258==    by 0x401DD81: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==30258==    by 0x40204EE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==30258==    by 0x4020381: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==30258==    by 0x4020A7B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==30258==    by 0x401C1D8: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18)
==30258== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==30258== 
==30258== HEAP SUMMARY:
==30258==     in use at exit: 128,869 bytes in 930 blocks
==30258==   total heap usage: 5,242,884 allocs, 5,241,954 frees, 468,897,528 bytes allocated
==30258== 
==30258== LEAK SUMMARY:
==30258==    definitely lost: 0 bytes in 0 blocks
==30258==    indirectly lost: 0 bytes in 0 blocks
==30258==      possibly lost: 0 bytes in 0 blocks
==30258==    still reachable: 11,973 bytes in 45 blocks
==30258==         suppressed: 116,896 bytes in 885 blocks
==30258== Reachable blocks (those to which a pointer was found) are not shown.
==30258== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==30258== 
==30258== For lists of detected and suppressed errors, rerun with: -s
==30258== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)