==25590== Memcheck, a memory error detector
==25590== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==25590== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==25590== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimpleTargetAreaModifier -malloc_debug -malloc_dump -memory_info
==25590== Parent PID: 15533
==25590== 
==25590== 
==25590== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==25590== Open file descriptor 10: /dev/shm/open_mpi.0000
==25590==    at 0x132943B6: __open_nocancel (open64_nocancel.c:39)
==25590==    by 0x13218943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==25590==    by 0x1886F89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==25590==    by 0x1886FA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==25590==    by 0x1886EC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==25590==    by 0x1886EF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==25590==    by 0x1873E159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==25590==    by 0x1089B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x108A049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x108A12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x1089818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x108D2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0xF89C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==25590==    by 0xEF670AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==25590==    by 0xEF670F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==25590==    by 0x403E943: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==25590==    by 0x4036221: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==25590==    by 0x4039C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==25590==    by 0x4039AC2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==25590==    by 0x403A26B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==25590==    by 0x4034258: main (TestSimpleTargetAreaModifier.cpp:19)
==25590== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==25590== Open file descriptor 9:
==25590==    at 0x132A284B: eventfd (syscall-template.S:120)
==25590==    by 0x188CF188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==25590==    by 0x188CD395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==25590==    by 0x188CD704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==25590==    by 0x188CD9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==25590==    by 0x188340D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==25590==    by 0x188341E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==25590==    by 0x1873E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==25590==    by 0x1089B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x108A049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x108A12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x1089818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x108D2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0xF89C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==25590==    by 0xEF670AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==25590==    by 0xEF670F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==25590==    by 0x403E943: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==25590==    by 0x4036221: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==25590==    by 0x4039C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==25590==    by 0x4039AC2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==25590==    by 0x403A26B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==25590==    by 0x4034258: main (TestSimpleTargetAreaModifier.cpp:19)
==25590== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==25590== Open file descriptor 8:
==25590==    at 0x1329313B: pipe2 (syscall-template.S:120)
==25590==    by 0x188CEF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==25590==    by 0x188D1579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==25590==    by 0x188D1774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==25590==    by 0x188CD8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==25590==    by 0x188340D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==25590==    by 0x188341E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==25590==    by 0x1873E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==25590==    by 0x1089B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x108A049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x108A12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x1089818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x108D2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0xF89C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==25590==    by 0xEF670AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==25590==    by 0xEF670F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==25590==    by 0x403E943: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==25590==    by 0x4036221: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==25590==    by 0x4039C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==25590==    by 0x4039AC2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==25590==    by 0x403A26B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==25590==    by 0x4034258: main (TestSimpleTargetAreaModifier.cpp:19)
==25590== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==25590== Open file descriptor 7:
==25590==    at 0x1329313B: pipe2 (syscall-template.S:120)
==25590==    by 0x188CEF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==25590==    by 0x188D1579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==25590==    by 0x188D1774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==25590==    by 0x188CD8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==25590==    by 0x188340D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==25590==    by 0x188341E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==25590==    by 0x1873E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==25590==    by 0x1089B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x108A049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x108A12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x1089818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x108D2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0xF89C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==25590==    by 0xEF670AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==25590==    by 0xEF670F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==25590==    by 0x403E943: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==25590==    by 0x4036221: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==25590==    by 0x4039C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==25590==    by 0x4039AC2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==25590==    by 0x403A26B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==25590==    by 0x4034258: main (TestSimpleTargetAreaModifier.cpp:19)
==25590== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==25590== Open file descriptor 5:
==25590==    at 0x132A334B: epoll_create1 (syscall-template.S:120)
==25590==    by 0x188D16FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==25590==    by 0x188CD8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==25590==    by 0x188340D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==25590==    by 0x188341E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==25590==    by 0x1873E120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==25590==    by 0x1089B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x108A049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x108A12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x1089818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0x108D2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==25590==    by 0xF89C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==25590==    by 0xEF670AB: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==25590==    by 0xEF670F9: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==25590==    by 0x403E943: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==25590==    by 0x4036221: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==25590==    by 0x4039C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==25590==    by 0x4039AC2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==25590==    by 0x403A26B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==25590==    by 0x4034258: main (TestSimpleTargetAreaModifier.cpp:19)
==25590== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==25590== 
==25590== HEAP SUMMARY:
==25590==     in use at exit: 128,930 bytes in 934 blocks
==25590==   total heap usage: 747,657 allocs, 746,723 frees, 132,571,971 bytes allocated
==25590== 
==25590== LEAK SUMMARY:
==25590==    definitely lost: 0 bytes in 0 blocks
==25590==    indirectly lost: 0 bytes in 0 blocks
==25590==      possibly lost: 0 bytes in 0 blocks
==25590==    still reachable: 11,973 bytes in 45 blocks
==25590==         suppressed: 116,957 bytes in 889 blocks
==25590== Reachable blocks (those to which a pointer was found) are not shown.
==25590== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==25590== 
==25590== For lists of detected and suppressed errors, rerun with: -s
==25590== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)