==15671== Memcheck, a memory error detector
==15671== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==15671== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==15671== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestArchiveCell -malloc_debug -malloc_dump -memory_info
==15671== Parent PID: 15670
==15671== 
==15671== 
==15671== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==15671== Open file descriptor 10: /dev/shm/open_mpi.0000
==15671==    at 0xF5C53B6: __open_nocancel (open64_nocancel.c:39)
==15671==    by 0xF549943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==15671==    by 0x16AB289E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15671==    by 0x16AB2A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15671==    by 0x16AB1C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15671==    by 0x16AB1F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15671==    by 0x16981159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15671==    by 0xEE5E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE6349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE642C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE5B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE95627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xDE5F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15671==    by 0xD52771B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15671==    by 0xD527769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15671==    by 0x40C7A5B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15671==    by 0x40C1C21: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15671==    by 0x40C4C48: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15671==    by 0x40C4AE6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15671==    by 0x40C5193: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15671==    by 0x40C0402: main (TestArchiveCell.cpp:18)
==15671== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15671== Open file descriptor 9:
==15671==    at 0xF5D384B: eventfd (syscall-template.S:120)
==15671==    by 0x16B12188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15671==    by 0x16B10395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15671==    by 0x16B10704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15671==    by 0x16B109F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15671==    by 0x16A770D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15671==    by 0x16A771E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15671==    by 0x16981120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15671==    by 0xEE5E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE6349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE642C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE5B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE95627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xDE5F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15671==    by 0xD52771B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15671==    by 0xD527769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15671==    by 0x40C7A5B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15671==    by 0x40C1C21: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15671==    by 0x40C4C48: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15671==    by 0x40C4AE6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15671==    by 0x40C5193: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15671==    by 0x40C0402: main (TestArchiveCell.cpp:18)
==15671== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15671== Open file descriptor 8:
==15671==    at 0xF5C413B: pipe2 (syscall-template.S:120)
==15671==    by 0x16B11F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15671==    by 0x16B14579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15671==    by 0x16B14774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15671==    by 0x16B108AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15671==    by 0x16A770D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15671==    by 0x16A771E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15671==    by 0x16981120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15671==    by 0xEE5E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE6349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE642C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE5B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE95627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xDE5F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15671==    by 0xD52771B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15671==    by 0xD527769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15671==    by 0x40C7A5B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15671==    by 0x40C1C21: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15671==    by 0x40C4C48: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15671==    by 0x40C4AE6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15671==    by 0x40C5193: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15671==    by 0x40C0402: main (TestArchiveCell.cpp:18)
==15671== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15671== Open file descriptor 7:
==15671==    at 0xF5C413B: pipe2 (syscall-template.S:120)
==15671==    by 0x16B11F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15671==    by 0x16B14579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15671==    by 0x16B14774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15671==    by 0x16B108AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15671==    by 0x16A770D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15671==    by 0x16A771E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15671==    by 0x16981120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15671==    by 0xEE5E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE6349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE642C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE5B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE95627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xDE5F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15671==    by 0xD52771B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15671==    by 0xD527769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15671==    by 0x40C7A5B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15671==    by 0x40C1C21: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15671==    by 0x40C4C48: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15671==    by 0x40C4AE6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15671==    by 0x40C5193: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15671==    by 0x40C0402: main (TestArchiveCell.cpp:18)
==15671== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15671== Open file descriptor 4:
==15671==    at 0xF5D434B: epoll_create1 (syscall-template.S:120)
==15671==    by 0x16B146FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15671==    by 0x16B108AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15671==    by 0x16A770D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15671==    by 0x16A771E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15671==    by 0x16981120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15671==    by 0xEE5E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE6349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE642C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE5B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xEE95627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15671==    by 0xDE5F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15671==    by 0xD52771B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15671==    by 0xD527769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15671==    by 0x40C7A5B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15671==    by 0x40C1C21: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15671==    by 0x40C4C48: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15671==    by 0x40C4AE6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15671==    by 0x40C5193: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15671==    by 0x40C0402: main (TestArchiveCell.cpp:18)
==15671== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15671== 
==15671== HEAP SUMMARY:
==15671==     in use at exit: 103,887 bytes in 631 blocks
==15671==   total heap usage: 33,830 allocs, 33,199 frees, 9,032,947 bytes allocated
==15671== 
==15671== LEAK SUMMARY:
==15671==    definitely lost: 0 bytes in 0 blocks
==15671==    indirectly lost: 0 bytes in 0 blocks
==15671==      possibly lost: 0 bytes in 0 blocks
==15671==    still reachable: 12,037 bytes in 46 blocks
==15671==         suppressed: 91,850 bytes in 585 blocks
==15671== Reachable blocks (those to which a pointer was found) are not shown.
==15671== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==15671== 
==15671== For lists of detected and suppressed errors, rerun with: -s
==15671== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)