==16101== Memcheck, a memory error detector ==16101== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==16101== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==16101== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestChastePoint -malloc_debug -malloc_dump -memory_info ==16101== Parent PID: 15856 ==16101== ==16101== ==16101== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==16101== Open file descriptor 10: /dev/shm/open_mpi.0000 ==16101== at 0x85163B6: __open_nocancel (open64_nocancel.c:39) ==16101== by 0x849A943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==16101== by 0xF78789E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16101== by 0xF787A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16101== by 0xF786C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16101== by 0xF786F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16101== by 0xF656159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16101== by 0x7DB10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DB649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DB72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DAE18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DE8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x6DB2446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16101== by 0x647A71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16101== by 0x647A769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16101== by 0x404CD6B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16101== by 0x404750B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16101== by 0x404A48A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16101== by 0x404A2B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16101== by 0x404A9FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16101== by 0x40458C2: main (TestChastePoint.cpp:19) ==16101== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16101== Open file descriptor 9: ==16101== at 0x852484B: eventfd (syscall-template.S:120) ==16101== by 0xF7E7188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16101== by 0xF7E5395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16101== by 0xF7E5704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16101== by 0xF7E59F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16101== by 0xF74C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16101== by 0xF74C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16101== by 0xF656120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16101== by 0x7DB10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DB649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DB72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DAE18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DE8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x6DB2446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16101== by 0x647A71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16101== by 0x647A769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16101== by 0x404CD6B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16101== by 0x404750B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16101== by 0x404A48A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16101== by 0x404A2B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16101== by 0x404A9FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16101== by 0x40458C2: main (TestChastePoint.cpp:19) ==16101== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16101== Open file descriptor 8: ==16101== at 0x851513B: pipe2 (syscall-template.S:120) ==16101== by 0xF7E6F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16101== by 0xF7E9579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16101== by 0xF7E9774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16101== by 0xF7E58AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16101== by 0xF74C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16101== by 0xF74C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16101== by 0xF656120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16101== by 0x7DB10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DB649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DB72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DAE18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DE8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x6DB2446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16101== by 0x647A71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16101== by 0x647A769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16101== by 0x404CD6B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16101== by 0x404750B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16101== by 0x404A48A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16101== by 0x404A2B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16101== by 0x404A9FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16101== by 0x40458C2: main (TestChastePoint.cpp:19) ==16101== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16101== Open file descriptor 7: ==16101== at 0x851513B: pipe2 (syscall-template.S:120) ==16101== by 0xF7E6F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16101== by 0xF7E9579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16101== by 0xF7E9774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16101== by 0xF7E58AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16101== by 0xF74C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16101== by 0xF74C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16101== by 0xF656120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16101== by 0x7DB10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DB649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DB72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DAE18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DE8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x6DB2446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16101== by 0x647A71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16101== by 0x647A769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16101== by 0x404CD6B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16101== by 0x404750B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16101== by 0x404A48A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16101== by 0x404A2B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16101== by 0x404A9FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16101== by 0x40458C2: main (TestChastePoint.cpp:19) ==16101== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16101== Open file descriptor 5: ==16101== at 0x852534B: epoll_create1 (syscall-template.S:120) ==16101== by 0xF7E96FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16101== by 0xF7E58AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16101== by 0xF74C0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16101== by 0xF74C1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16101== by 0xF656120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16101== by 0x7DB10E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DB649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DB72C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DAE18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x7DE8627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16101== by 0x6DB2446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16101== by 0x647A71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16101== by 0x647A769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16101== by 0x404CD6B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16101== by 0x404750B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16101== by 0x404A48A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16101== by 0x404A2B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16101== by 0x404A9FD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16101== by 0x40458C2: main (TestChastePoint.cpp:19) ==16101== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16101== ==16101== HEAP SUMMARY: ==16101== in use at exit: 128,837 bytes in 933 blocks ==16101== total heap usage: 27,356 allocs, 26,423 frees, 10,440,745 bytes allocated ==16101== ==16101== LEAK SUMMARY: ==16101== definitely lost: 0 bytes in 0 blocks ==16101== indirectly lost: 0 bytes in 0 blocks ==16101== possibly lost: 0 bytes in 0 blocks ==16101== still reachable: 11,893 bytes in 44 blocks ==16101== suppressed: 116,944 bytes in 889 blocks ==16101== Reachable blocks (those to which a pointer was found) are not shown. ==16101== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==16101== ==16101== For lists of detected and suppressed errors, rerun with: -s ==16101== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)