==15895== Memcheck, a memory error detector ==15895== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==15895== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==15895== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestExecutableSupport -malloc_debug -malloc_dump -memory_info ==15895== Parent PID: 15856 ==15895== ==15895== ==15895== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==15895== Open file descriptor 10: /dev/shm/open_mpi.0000 ==15895== at 0x4D823B6: __open_nocancel (open64_nocancel.c:39) ==15895== by 0x4D06943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==15895== by 0x719C89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15895== by 0x719CA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15895== by 0x719BC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15895== by 0x719BF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15895== by 0x706B159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15895== by 0x4F090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x5B65446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15895== by 0x491704A: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:96) ==15895== by 0x4918E14: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:312) ==15895== by 0x400F545: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==15895== by 0x400F934: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==15895== by 0x400A9FA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==15895== by 0x400D7E6: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==15895== by 0x400D6B7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==15895== by 0x400D549: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==15895== by 0x400D3AE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15895== by 0x400DA5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15895== by 0x40099B2: main (TestExecutableSupport.cpp:18) ==15895== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15895== Open file descriptor 9: ==15895== at 0x4D9084B: eventfd (syscall-template.S:120) ==15895== by 0x71FC188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15895== by 0x71FA395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15895== by 0x71FA704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15895== by 0x71FA9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15895== by 0x71610D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15895== by 0x71611E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15895== by 0x706B120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15895== by 0x4F090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x5B65446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15895== by 0x491704A: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:96) ==15895== by 0x4918E14: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:312) ==15895== by 0x400F545: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==15895== by 0x400F934: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==15895== by 0x400A9FA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==15895== by 0x400D7E6: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==15895== by 0x400D6B7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==15895== by 0x400D549: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==15895== by 0x400D3AE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15895== by 0x400DA5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15895== by 0x40099B2: main (TestExecutableSupport.cpp:18) ==15895== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15895== Open file descriptor 8: ==15895== at 0x4D8113B: pipe2 (syscall-template.S:120) ==15895== by 0x71FBF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15895== by 0x71FE579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15895== by 0x71FE774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15895== by 0x71FA8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15895== by 0x71610D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15895== by 0x71611E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15895== by 0x706B120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15895== by 0x4F090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x5B65446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15895== by 0x491704A: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:96) ==15895== by 0x4918E14: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:312) ==15895== by 0x400F545: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==15895== by 0x400F934: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==15895== by 0x400A9FA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==15895== by 0x400D7E6: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==15895== by 0x400D6B7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==15895== by 0x400D549: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==15895== by 0x400D3AE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15895== by 0x400DA5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15895== by 0x40099B2: main (TestExecutableSupport.cpp:18) ==15895== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15895== Open file descriptor 7: ==15895== at 0x4D8113B: pipe2 (syscall-template.S:120) ==15895== by 0x71FBF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15895== by 0x71FE579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15895== by 0x71FE774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15895== by 0x71FA8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15895== by 0x71610D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15895== by 0x71611E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15895== by 0x706B120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15895== by 0x4F090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x5B65446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15895== by 0x491704A: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:96) ==15895== by 0x4918E14: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:312) ==15895== by 0x400F545: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==15895== by 0x400F934: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==15895== by 0x400A9FA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==15895== by 0x400D7E6: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==15895== by 0x400D6B7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==15895== by 0x400D549: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==15895== by 0x400D3AE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15895== by 0x400DA5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15895== by 0x40099B2: main (TestExecutableSupport.cpp:18) ==15895== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15895== Open file descriptor 4: ==15895== at 0x4D9134B: epoll_create1 (syscall-template.S:120) ==15895== by 0x71FE6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15895== by 0x71FA8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15895== by 0x71610D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15895== by 0x71611E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15895== by 0x706B120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15895== by 0x4F090E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F0E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F0F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F0618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x4F40627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15895== by 0x5B65446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15895== by 0x491704A: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:96) ==15895== by 0x4918E14: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:312) ==15895== by 0x400F545: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==15895== by 0x400F934: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==15895== by 0x400A9FA: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==15895== by 0x400D7E6: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==15895== by 0x400D6B7: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==15895== by 0x400D549: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==15895== by 0x400D3AE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15895== by 0x400DA5B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15895== by 0x40099B2: main (TestExecutableSupport.cpp:18) ==15895== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15895== ==15895== HEAP SUMMARY: ==15895== in use at exit: 127,023 bytes in 929 blocks ==15895== total heap usage: 25,432 allocs, 24,503 frees, 10,289,163 bytes allocated ==15895== ==15895== LEAK SUMMARY: ==15895== definitely lost: 0 bytes in 0 blocks ==15895== indirectly lost: 0 bytes in 0 blocks ==15895== possibly lost: 0 bytes in 0 blocks ==15895== still reachable: 10,073 bytes in 40 blocks ==15895== suppressed: 116,950 bytes in 889 blocks ==15895== Reachable blocks (those to which a pointer was found) are not shown. ==15895== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==15895== ==15895== For lists of detected and suppressed errors, rerun with: -s ==15895== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)