==15876== Memcheck, a memory error detector ==15876== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==15876== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==15876== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestModernCppFeatures -malloc_debug -malloc_dump -memory_info ==15876== Parent PID: 15856 ==15876== ==15876== ==15876== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==15876== Open file descriptor 10: /dev/shm/open_mpi.0000 ==15876== at 0x6A8A3B6: __open_nocancel (open64_nocancel.c:39) ==15876== by 0x6A0E943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==15876== by 0x9B3589E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15876== by 0x9B35A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15876== by 0x9B34C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15876== by 0x9B34F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15876== by 0x9A04159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15876== by 0x62410E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x624649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x62472C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x623E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x6278627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x521F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15876== by 0x495171B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15876== by 0x4951769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15876== by 0x40168EF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15876== by 0x4011E33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15876== by 0x40147B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15876== by 0x401464E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15876== by 0x4014CFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15876== by 0x4010622: main (TestModernCppFeatures.cpp:18) ==15876== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15876== Open file descriptor 9: ==15876== at 0x6A9884B: eventfd (syscall-template.S:120) ==15876== by 0x9B95188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15876== by 0x9B93395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15876== by 0x9B93704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15876== by 0x9B939F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15876== by 0x9AFA0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15876== by 0x9AFA1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15876== by 0x9A04120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15876== by 0x62410E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x624649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x62472C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x623E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x6278627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x521F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15876== by 0x495171B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15876== by 0x4951769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15876== by 0x40168EF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15876== by 0x4011E33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15876== by 0x40147B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15876== by 0x401464E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15876== by 0x4014CFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15876== by 0x4010622: main (TestModernCppFeatures.cpp:18) ==15876== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15876== Open file descriptor 8: ==15876== at 0x6A8913B: pipe2 (syscall-template.S:120) ==15876== by 0x9B94F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15876== by 0x9B97579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15876== by 0x9B97774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15876== by 0x9B938AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15876== by 0x9AFA0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15876== by 0x9AFA1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15876== by 0x9A04120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15876== by 0x62410E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x624649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x62472C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x623E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x6278627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x521F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15876== by 0x495171B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15876== by 0x4951769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15876== by 0x40168EF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15876== by 0x4011E33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15876== by 0x40147B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15876== by 0x401464E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15876== by 0x4014CFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15876== by 0x4010622: main (TestModernCppFeatures.cpp:18) ==15876== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15876== Open file descriptor 7: ==15876== at 0x6A8913B: pipe2 (syscall-template.S:120) ==15876== by 0x9B94F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15876== by 0x9B97579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15876== by 0x9B97774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15876== by 0x9B938AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15876== by 0x9AFA0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15876== by 0x9AFA1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15876== by 0x9A04120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15876== by 0x62410E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x624649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x62472C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x623E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x6278627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x521F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15876== by 0x495171B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15876== by 0x4951769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15876== by 0x40168EF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15876== by 0x4011E33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15876== by 0x40147B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15876== by 0x401464E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15876== by 0x4014CFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15876== by 0x4010622: main (TestModernCppFeatures.cpp:18) ==15876== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15876== Open file descriptor 4: ==15876== at 0x6A9934B: epoll_create1 (syscall-template.S:120) ==15876== by 0x9B976FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15876== by 0x9B938AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15876== by 0x9AFA0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15876== by 0x9AFA1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15876== by 0x9A04120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15876== by 0x62410E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x624649F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x62472C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x623E18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x6278627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15876== by 0x521F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15876== by 0x495171B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15876== by 0x4951769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15876== by 0x40168EF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==15876== by 0x4011E33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15876== by 0x40147B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15876== by 0x401464E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15876== by 0x4014CFB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15876== by 0x4010622: main (TestModernCppFeatures.cpp:18) ==15876== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15876== ==15876== HEAP SUMMARY: ==15876== in use at exit: 127,023 bytes in 929 blocks ==15876== total heap usage: 25,020 allocs, 24,091 frees, 10,140,053 bytes allocated ==15876== ==15876== LEAK SUMMARY: ==15876== definitely lost: 0 bytes in 0 blocks ==15876== indirectly lost: 0 bytes in 0 blocks ==15876== possibly lost: 0 bytes in 0 blocks ==15876== still reachable: 10,073 bytes in 40 blocks ==15876== suppressed: 116,950 bytes in 889 blocks ==15876== Reachable blocks (those to which a pointer was found) are not shown. ==15876== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==15876== ==15876== For lists of detected and suppressed errors, rerun with: -s ==15876== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)