==28065== Memcheck, a memory error detector
==28065== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==28065== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==28065== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellCycleModelTutorial -malloc_debug -malloc_dump -memory_info
==28065== Parent PID: 15461
==28065== 
==28065== 
==28065== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==28065== Open file descriptor 10: /dev/shm/open_mpi.0000
==28065==    at 0x134FB3B6: __open_nocancel (open64_nocancel.c:39)
==28065==    by 0x1347F943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==28065==    by 0x189F489E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28065==    by 0x189F4A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28065==    by 0x189F3C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28065==    by 0x189F3F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28065==    by 0x188C3159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28065==    by 0x10A200E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A2549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A262C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A1D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A57627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0xFA21446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==28065==    by 0xF0EA71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==28065==    by 0xF0EA769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==28065==    by 0x4170043: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==28065==    by 0x4168F11: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==28065==    by 0x416CCFE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==28065==    by 0x416CB22: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==28065==    by 0x416D2CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==28065==    by 0x4164F68: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19)
==28065== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==28065== Open file descriptor 9:
==28065==    at 0x1350984B: eventfd (syscall-template.S:120)
==28065==    by 0x18A54188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28065==    by 0x18A52395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28065==    by 0x18A52704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28065==    by 0x18A529F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28065==    by 0x189B90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28065==    by 0x189B91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28065==    by 0x188C3120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28065==    by 0x10A200E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A2549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A262C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A1D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A57627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0xFA21446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==28065==    by 0xF0EA71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==28065==    by 0xF0EA769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==28065==    by 0x4170043: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==28065==    by 0x4168F11: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==28065==    by 0x416CCFE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==28065==    by 0x416CB22: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==28065==    by 0x416D2CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==28065==    by 0x4164F68: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19)
==28065== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==28065== Open file descriptor 8:
==28065==    at 0x134FA13B: pipe2 (syscall-template.S:120)
==28065==    by 0x18A53F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28065==    by 0x18A56579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28065==    by 0x18A56774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28065==    by 0x18A528AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28065==    by 0x189B90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28065==    by 0x189B91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28065==    by 0x188C3120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28065==    by 0x10A200E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A2549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A262C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A1D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A57627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0xFA21446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==28065==    by 0xF0EA71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==28065==    by 0xF0EA769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==28065==    by 0x4170043: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==28065==    by 0x4168F11: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==28065==    by 0x416CCFE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==28065==    by 0x416CB22: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==28065==    by 0x416D2CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==28065==    by 0x4164F68: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19)
==28065== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==28065== Open file descriptor 7:
==28065==    at 0x134FA13B: pipe2 (syscall-template.S:120)
==28065==    by 0x18A53F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28065==    by 0x18A56579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28065==    by 0x18A56774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28065==    by 0x18A528AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28065==    by 0x189B90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28065==    by 0x189B91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28065==    by 0x188C3120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28065==    by 0x10A200E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A2549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A262C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A1D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A57627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0xFA21446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==28065==    by 0xF0EA71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==28065==    by 0xF0EA769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==28065==    by 0x4170043: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==28065==    by 0x4168F11: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==28065==    by 0x416CCFE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==28065==    by 0x416CB22: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==28065==    by 0x416D2CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==28065==    by 0x4164F68: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19)
==28065== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==28065== Open file descriptor 5:
==28065==    at 0x1350A34B: epoll_create1 (syscall-template.S:120)
==28065==    by 0x18A566FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28065==    by 0x18A528AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28065==    by 0x189B90D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28065==    by 0x189B91E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28065==    by 0x188C3120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28065==    by 0x10A200E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A2549F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A262C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A1D18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0x10A57627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28065==    by 0xFA21446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==28065==    by 0xF0EA71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==28065==    by 0xF0EA769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==28065==    by 0x4170043: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==28065==    by 0x4168F11: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==28065==    by 0x416CCFE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==28065==    by 0x416CB22: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==28065==    by 0x416D2CB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==28065==    by 0x4164F68: main (TestCreatingAndUsingANewCellCycleModelTutorial.cpp:19)
==28065== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==28065== 
==28065== HEAP SUMMARY:
==28065==     in use at exit: 128,875 bytes in 930 blocks
==28065==   total heap usage: 9,016,767 allocs, 9,015,837 frees, 873,886,750 bytes allocated
==28065== 
==28065== LEAK SUMMARY:
==28065==    definitely lost: 0 bytes in 0 blocks
==28065==    indirectly lost: 0 bytes in 0 blocks
==28065==      possibly lost: 0 bytes in 0 blocks
==28065==    still reachable: 11,973 bytes in 45 blocks
==28065==         suppressed: 116,902 bytes in 885 blocks
==28065== Reachable blocks (those to which a pointer was found) are not shown.
==28065== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==28065== 
==28065== For lists of detected and suppressed errors, rerun with: -s
==28065== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)