==13601== Memcheck, a memory error detector ==13601== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==13601== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==13601== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptDivisionRules -malloc_debug -malloc_dump -memory_info ==13601== Parent PID: 13502 ==13601== ==13601== ==13601== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==13601== Open file descriptor 10: /dev/shm/open_mpi.0000 ==13601== at 0x14B293B6: __open_nocancel (open64_nocancel.c:39) ==13601== by 0x14AAD943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==13601== by 0x1A1A589E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13601== by 0x1A1A5A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13601== by 0x1A1A4C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13601== by 0x1A1A4F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13601== by 0x1A074159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13601== by 0x143C40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143C949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143CA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143C118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143FB627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x6A72446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13601== by 0x1431B71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13601== by 0x1431B769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13601== by 0x406AC63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13601== by 0x4064681: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13601== by 0x4067A1E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13601== by 0x4067842: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13601== by 0x4067FEB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13601== by 0x40626B8: main (TestCryptDivisionRules.cpp:19) ==13601== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13601== Open file descriptor 9: ==13601== at 0x14B3784B: eventfd (syscall-template.S:120) ==13601== by 0x1A205188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13601== by 0x1A203395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13601== by 0x1A203704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13601== by 0x1A2039F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13601== by 0x1A16A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13601== by 0x1A16A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13601== by 0x1A074120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13601== by 0x143C40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143C949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143CA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143C118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143FB627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x6A72446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13601== by 0x1431B71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13601== by 0x1431B769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13601== by 0x406AC63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13601== by 0x4064681: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13601== by 0x4067A1E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13601== by 0x4067842: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13601== by 0x4067FEB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13601== by 0x40626B8: main (TestCryptDivisionRules.cpp:19) ==13601== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13601== Open file descriptor 8: ==13601== at 0x14B2813B: pipe2 (syscall-template.S:120) ==13601== by 0x1A204F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13601== by 0x1A207579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13601== by 0x1A207774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13601== by 0x1A2038AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13601== by 0x1A16A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13601== by 0x1A16A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13601== by 0x1A074120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13601== by 0x143C40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143C949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143CA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143C118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143FB627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x6A72446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13601== by 0x1431B71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13601== by 0x1431B769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13601== by 0x406AC63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13601== by 0x4064681: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13601== by 0x4067A1E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13601== by 0x4067842: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13601== by 0x4067FEB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13601== by 0x40626B8: main (TestCryptDivisionRules.cpp:19) ==13601== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13601== Open file descriptor 7: ==13601== at 0x14B2813B: pipe2 (syscall-template.S:120) ==13601== by 0x1A204F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13601== by 0x1A207579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13601== by 0x1A207774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13601== by 0x1A2038AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13601== by 0x1A16A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13601== by 0x1A16A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13601== by 0x1A074120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13601== by 0x143C40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143C949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143CA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143C118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143FB627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x6A72446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13601== by 0x1431B71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13601== by 0x1431B769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13601== by 0x406AC63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13601== by 0x4064681: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13601== by 0x4067A1E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13601== by 0x4067842: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13601== by 0x4067FEB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13601== by 0x40626B8: main (TestCryptDivisionRules.cpp:19) ==13601== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13601== Open file descriptor 6: ==13601== at 0x14B3834B: epoll_create1 (syscall-template.S:120) ==13601== by 0x1A2076FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13601== by 0x1A2038AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==13601== by 0x1A16A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13601== by 0x1A16A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13601== by 0x1A074120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==13601== by 0x143C40E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143C949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143CA2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143C118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x143FB627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==13601== by 0x6A72446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==13601== by 0x1431B71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==13601== by 0x1431B769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==13601== by 0x406AC63: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==13601== by 0x4064681: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==13601== by 0x4067A1E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==13601== by 0x4067842: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==13601== by 0x4067FEB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==13601== by 0x40626B8: main (TestCryptDivisionRules.cpp:19) ==13601== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==13601== ==13601== HEAP SUMMARY: ==13601== in use at exit: 126,474 bytes in 903 blocks ==13601== total heap usage: 37,036 allocs, 36,133 frees, 11,386,205 bytes allocated ==13601== ==13601== LEAK SUMMARY: ==13601== definitely lost: 0 bytes in 0 blocks ==13601== indirectly lost: 0 bytes in 0 blocks ==13601== possibly lost: 0 bytes in 0 blocks ==13601== still reachable: 11,997 bytes in 46 blocks ==13601== suppressed: 114,477 bytes in 857 blocks ==13601== Reachable blocks (those to which a pointer was found) are not shown. ==13601== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==13601== ==13601== For lists of detected and suppressed errors, rerun with: -s ==13601== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)