==16086== Memcheck, a memory error detector ==16086== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==16086== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==16086== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestCwd -malloc_debug -malloc_dump -memory_info ==16086== Parent PID: 16058 ==16086== ==16086== ==16086== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==16086== Open file descriptor 10: /dev/shm/open_mpi.0000 ==16086== at 0x699C3B6: __open_nocancel (open64_nocancel.c:39) ==16086== by 0x6920943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==16086== by 0x9B2989E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16086== by 0x9B29A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16086== by 0x9B28C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16086== by 0x9B28F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16086== by 0x99F8159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16086== by 0x62350E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x623A49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x623B2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x623218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x626C627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x5212446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16086== by 0x494471B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16086== by 0x4944769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16086== by 0x4011113: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16086== by 0x400CEB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16086== by 0x400F16C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16086== by 0x400F009: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16086== by 0x400F6B7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16086== by 0x400B6A2: main (TestCwd.cpp:18) ==16086== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16086== Open file descriptor 9: ==16086== at 0x69AA84B: eventfd (syscall-template.S:120) ==16086== by 0x9B89188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16086== by 0x9B87395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16086== by 0x9B87704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16086== by 0x9B879F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16086== by 0x9AEE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16086== by 0x9AEE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16086== by 0x99F8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16086== by 0x62350E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x623A49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x623B2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x623218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x626C627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x5212446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16086== by 0x494471B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16086== by 0x4944769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16086== by 0x4011113: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16086== by 0x400CEB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16086== by 0x400F16C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16086== by 0x400F009: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16086== by 0x400F6B7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16086== by 0x400B6A2: main (TestCwd.cpp:18) ==16086== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16086== Open file descriptor 8: ==16086== at 0x699B13B: pipe2 (syscall-template.S:120) ==16086== by 0x9B88F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16086== by 0x9B8B579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16086== by 0x9B8B774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16086== by 0x9B878AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16086== by 0x9AEE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16086== by 0x9AEE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16086== by 0x99F8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16086== by 0x62350E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x623A49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x623B2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x623218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x626C627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x5212446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16086== by 0x494471B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16086== by 0x4944769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16086== by 0x4011113: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16086== by 0x400CEB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16086== by 0x400F16C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16086== by 0x400F009: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16086== by 0x400F6B7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16086== by 0x400B6A2: main (TestCwd.cpp:18) ==16086== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16086== Open file descriptor 7: ==16086== at 0x699B13B: pipe2 (syscall-template.S:120) ==16086== by 0x9B88F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16086== by 0x9B8B579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16086== by 0x9B8B774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16086== by 0x9B878AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16086== by 0x9AEE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16086== by 0x9AEE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16086== by 0x99F8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16086== by 0x62350E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x623A49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x623B2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x623218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x626C627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x5212446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16086== by 0x494471B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16086== by 0x4944769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16086== by 0x4011113: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16086== by 0x400CEB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16086== by 0x400F16C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16086== by 0x400F009: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16086== by 0x400F6B7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16086== by 0x400B6A2: main (TestCwd.cpp:18) ==16086== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16086== Open file descriptor 6: ==16086== at 0x69AB34B: epoll_create1 (syscall-template.S:120) ==16086== by 0x9B8B6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16086== by 0x9B878AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16086== by 0x9AEE0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16086== by 0x9AEE1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16086== by 0x99F8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16086== by 0x62350E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x623A49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x623B2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x623218F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x626C627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16086== by 0x5212446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16086== by 0x494471B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16086== by 0x4944769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16086== by 0x4011113: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16086== by 0x400CEB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16086== by 0x400F16C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16086== by 0x400F009: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16086== by 0x400F6B7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16086== by 0x400B6A2: main (TestCwd.cpp:18) ==16086== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16086== ==16086== HEAP SUMMARY: ==16086== in use at exit: 124,535 bytes in 897 blocks ==16086== total heap usage: 25,127 allocs, 24,230 frees, 10,101,546 bytes allocated ==16086== ==16086== LEAK SUMMARY: ==16086== definitely lost: 0 bytes in 0 blocks ==16086== indirectly lost: 0 bytes in 0 blocks ==16086== possibly lost: 0 bytes in 0 blocks ==16086== still reachable: 10,073 bytes in 40 blocks ==16086== suppressed: 114,462 bytes in 857 blocks ==16086== Reachable blocks (those to which a pointer was found) are not shown. ==16086== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==16086== ==16086== For lists of detected and suppressed errors, rerun with: -s ==16086== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)