==17195== Memcheck, a memory error detector
==17195== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==17195== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==17195== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHdf5ToVisualizerConverters -malloc_debug -malloc_dump -memory_info
==17195== Parent PID: 14726
==17195== 
==17195== 
==17195== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==17195== Open file descriptor 10: /dev/shm/open_mpi.0000
==17195==    at 0xC4DD3B6: __open_nocancel (open64_nocancel.c:39)
==17195==    by 0xC461943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==17195==    by 0x110AE89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17195==    by 0x110AEA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17195==    by 0x110ADC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17195==    by 0x110ADF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17195==    by 0x10F7D159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17195==    by 0xC81B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC82049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC8212C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC81818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC852627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xD806446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17195==    by 0xC0BF71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17195==    by 0xC0BF769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17195==    by 0x4024434: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17195==    by 0x401D341: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17195==    by 0x40202CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17195==    by 0x40200F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17195==    by 0x402089B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17195==    by 0x401B378: main (TestHdf5ToVisualizerConverters.cpp:19)
==17195== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17195== Open file descriptor 9:
==17195==    at 0xC4EB84B: eventfd (syscall-template.S:120)
==17195==    by 0x1110E188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17195==    by 0x1110C395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17195==    by 0x1110C704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17195==    by 0x1110C9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17195==    by 0x110730D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17195==    by 0x110731E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17195==    by 0x10F7D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17195==    by 0xC81B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC82049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC8212C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC81818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC852627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xD806446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17195==    by 0xC0BF71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17195==    by 0xC0BF769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17195==    by 0x4024434: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17195==    by 0x401D341: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17195==    by 0x40202CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17195==    by 0x40200F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17195==    by 0x402089B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17195==    by 0x401B378: main (TestHdf5ToVisualizerConverters.cpp:19)
==17195== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17195== Open file descriptor 8:
==17195==    at 0xC4DC13B: pipe2 (syscall-template.S:120)
==17195==    by 0x1110DF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17195==    by 0x11110579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17195==    by 0x11110774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17195==    by 0x1110C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17195==    by 0x110730D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17195==    by 0x110731E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17195==    by 0x10F7D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17195==    by 0xC81B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC82049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC8212C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC81818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC852627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xD806446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17195==    by 0xC0BF71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17195==    by 0xC0BF769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17195==    by 0x4024434: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17195==    by 0x401D341: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17195==    by 0x40202CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17195==    by 0x40200F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17195==    by 0x402089B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17195==    by 0x401B378: main (TestHdf5ToVisualizerConverters.cpp:19)
==17195== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17195== Open file descriptor 7:
==17195==    at 0xC4DC13B: pipe2 (syscall-template.S:120)
==17195==    by 0x1110DF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17195==    by 0x11110579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17195==    by 0x11110774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17195==    by 0x1110C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17195==    by 0x110730D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17195==    by 0x110731E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17195==    by 0x10F7D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17195==    by 0xC81B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC82049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC8212C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC81818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC852627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xD806446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17195==    by 0xC0BF71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17195==    by 0xC0BF769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17195==    by 0x4024434: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17195==    by 0x401D341: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17195==    by 0x40202CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17195==    by 0x40200F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17195==    by 0x402089B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17195==    by 0x401B378: main (TestHdf5ToVisualizerConverters.cpp:19)
==17195== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17195== Open file descriptor 4:
==17195==    at 0xC4EC34B: epoll_create1 (syscall-template.S:120)
==17195==    by 0x111106FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17195==    by 0x1110C8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==17195==    by 0x110730D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17195==    by 0x110731E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17195==    by 0x10F7D120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==17195==    by 0xC81B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC82049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC8212C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC81818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xC852627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==17195==    by 0xD806446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==17195==    by 0xC0BF71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==17195==    by 0xC0BF769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==17195==    by 0x4024434: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==17195==    by 0x401D341: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==17195==    by 0x40202CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==17195==    by 0x40200F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==17195==    by 0x402089B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==17195==    by 0x401B378: main (TestHdf5ToVisualizerConverters.cpp:19)
==17195== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==17195== 
==17195== HEAP SUMMARY:
==17195==     in use at exit: 103,814 bytes in 629 blocks
==17195==   total heap usage: 108,817 allocs, 108,188 frees, 38,120,042 bytes allocated
==17195== 
==17195== LEAK SUMMARY:
==17195==    definitely lost: 0 bytes in 0 blocks
==17195==    indirectly lost: 0 bytes in 0 blocks
==17195==      possibly lost: 0 bytes in 0 blocks
==17195==    still reachable: 11,949 bytes in 44 blocks
==17195==         suppressed: 91,865 bytes in 585 blocks
==17195== Reachable blocks (those to which a pointer was found) are not shown.
==17195== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==17195== 
==17195== For lists of detected and suppressed errors, rerun with: -s
==17195== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)