==16199== Memcheck, a memory error detector ==16199== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==16199== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==16199== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestRandomNumberGenerator -malloc_debug -malloc_dump -memory_info ==16199== Parent PID: 16058 ==16199== ==16199== ==16199== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==16199== Open file descriptor 10: /dev/shm/open_mpi.0000 ==16199== at 0x6A0C3B6: __open_nocancel (open64_nocancel.c:39) ==16199== by 0x6990943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==16199== by 0x9B5489E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16199== by 0x9B54A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16199== by 0x9B53C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16199== by 0x9B53F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16199== by 0x9A23159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16199== by 0x62A70E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62AC49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62AD2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62A418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62DE627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x52A6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16199== by 0x496F71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16199== by 0x496F769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16199== by 0x402BB71: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16199== by 0x4026951: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16199== by 0x4029292: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16199== by 0x4029130: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16199== by 0x40297DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16199== by 0x4025132: main (TestRandomNumberGenerator.cpp:18) ==16199== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16199== Open file descriptor 9: ==16199== at 0x6A1A84B: eventfd (syscall-template.S:120) ==16199== by 0x9BB4188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16199== by 0x9BB2395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16199== by 0x9BB2704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16199== by 0x9BB29F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16199== by 0x9B190D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16199== by 0x9B191E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16199== by 0x9A23120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16199== by 0x62A70E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62AC49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62AD2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62A418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62DE627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x52A6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16199== by 0x496F71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16199== by 0x496F769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16199== by 0x402BB71: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16199== by 0x4026951: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16199== by 0x4029292: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16199== by 0x4029130: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16199== by 0x40297DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16199== by 0x4025132: main (TestRandomNumberGenerator.cpp:18) ==16199== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16199== Open file descriptor 8: ==16199== at 0x6A0B13B: pipe2 (syscall-template.S:120) ==16199== by 0x9BB3F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16199== by 0x9BB6579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16199== by 0x9BB6774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16199== by 0x9BB28AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16199== by 0x9B190D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16199== by 0x9B191E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16199== by 0x9A23120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16199== by 0x62A70E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62AC49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62AD2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62A418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62DE627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x52A6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16199== by 0x496F71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16199== by 0x496F769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16199== by 0x402BB71: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16199== by 0x4026951: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16199== by 0x4029292: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16199== by 0x4029130: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16199== by 0x40297DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16199== by 0x4025132: main (TestRandomNumberGenerator.cpp:18) ==16199== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16199== Open file descriptor 7: ==16199== at 0x6A0B13B: pipe2 (syscall-template.S:120) ==16199== by 0x9BB3F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16199== by 0x9BB6579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16199== by 0x9BB6774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16199== by 0x9BB28AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16199== by 0x9B190D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16199== by 0x9B191E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16199== by 0x9A23120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16199== by 0x62A70E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62AC49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62AD2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62A418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62DE627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x52A6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16199== by 0x496F71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16199== by 0x496F769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16199== by 0x402BB71: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16199== by 0x4026951: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16199== by 0x4029292: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16199== by 0x4029130: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16199== by 0x40297DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16199== by 0x4025132: main (TestRandomNumberGenerator.cpp:18) ==16199== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16199== Open file descriptor 6: ==16199== at 0x6A1B34B: epoll_create1 (syscall-template.S:120) ==16199== by 0x9BB66FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16199== by 0x9BB28AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16199== by 0x9B190D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16199== by 0x9B191E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16199== by 0x9A23120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16199== by 0x62A70E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62AC49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62AD2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62A418F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x62DE627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16199== by 0x52A6446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16199== by 0x496F71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16199== by 0x496F769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16199== by 0x402BB71: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16199== by 0x4026951: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16199== by 0x4029292: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16199== by 0x4029130: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16199== by 0x40297DD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16199== by 0x4025132: main (TestRandomNumberGenerator.cpp:18) ==16199== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16199== ==16199== HEAP SUMMARY: ==16199== in use at exit: 127,105 bytes in 898 blocks ==16199== total heap usage: 25,237 allocs, 24,339 frees, 10,187,802 bytes allocated ==16199== ==16199== LEAK SUMMARY: ==16199== definitely lost: 0 bytes in 0 blocks ==16199== indirectly lost: 0 bytes in 0 blocks ==16199== possibly lost: 0 bytes in 0 blocks ==16199== still reachable: 12,625 bytes in 41 blocks ==16199== suppressed: 114,480 bytes in 857 blocks ==16199== Reachable blocks (those to which a pointer was found) are not shown. ==16199== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==16199== ==16199== For lists of detected and suppressed errors, rerun with: -s ==16199== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)